BAC Information

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BAC

Clone NameMSMg01-097F07
Chromosome7 (Build37)
Map Location 130,788,928 - 130,789,218
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng3, 4930413G21Rik, Rbbp6, LOC628696, LOC100042977, LOC100042981, Tnrc6a, Slc5a11, Arhgap17, Lcmt1, Aqp8, Zkscan2, LOC100043482
Downstream geneEG628779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097F07.T7 (MSMg01no097_f07.b1)MSMg01-097F07.TJ (MSMg01no097_f07.g1)
ACCAG313787AG313788
length776768
length of high quality
(start - end)
69 (187 - 255)291 (127 - 417)
definitionCHROMAT_FILE: MSMg01no097_f07.b1 PHD_FILE: MSMg01no097_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:02 2005CHROMAT_FILE: MSMg01no097_f07.g1 PHD_FILE: MSMg01no097_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCNCCCACCACACCACCACCACCACACAAAACTACCCCCCCCCCCCCCCC
NCNNNNTCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCACACA
TCCCCGGAATTCAGTAAGTCTTTCACAGACCCGAAGGGGCCATGCTATAC
CAACCCCAGTGATTCTTAAAAGGGAGCTGTCTTTATTGCCTGTTTCCAGT
ACTGCCTTTCCTTCCCAGTGCCAAACTTCAATTTATAGCCTGTTCCCAGC
TTTTGATCATGTTGCTCTCTGCCTCCACCTCCCACATGACTACCAAGTGC
CTGGGCAACTCCTCTTCAAACATATTGCACAAATGTCAATGCTCTAGGTT
CAGCCAAATGACATTACGGCTCAATTTAAATGCAAACTTTGCATGCCAAG
AGGTGTATCTTACCTGACCCCAAGATCAATCTCTCCCGCTTCAGTGCTGC
AAGCTATGTTAATAAAAATTCAAAACACCGATGTGGATCGAGGACACTGA
GCACCTCCCATTCGACCACCTCTCTTTCCTTTGTGCAGTCATTTTCTACA
CACACCTGCCTACCCATCTGTTATGCCAAAAGTAGCCCACCCAAGCCCTG
ACGGACACCCACCACGCCCCCATTCACACGTTGCTGCCCCCCATCAAATC
GCTTTTCCCACGACCCCCACCTTGAAACAGATTTTCCCGAAATCATTTTC
AAATTCACTCCTGTCCCCCCACTACGCCAAAACACCACCCATAAAGTATC
AAATCCCAACCACCGTAGAACCCCCC
CAAACACCCATATTTCCAAAAAAAAATAACACCCNTTCACCCCCCAATTN
TNTTCGATGATATGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGACTGGATGGGAGGTTTCT
TCAGGGGTCTACTTGGCAGTTTGTGTTTCCCAGCATTGACAATTCAGGCA
GAAGCAGGGCAGACTTGCTGACTCCTTGGGATTTCAGAGCCTGGTCCCTT
GAGCCCAGATTTTATGACCCTGCTCTCATTGGCATGGATTCTTTTGTACA
TTTGGTGTTTTGAGCGGCCTTCAAGGCTAGGCACCACCTCCAGCTACTCA
GTACCCAGAATGTGCCCCTGAGTGATCTGAGGTCTGCATGGTGATGAGCA
ATTTGATGCCTGTTCTTCATGGAGGACGACACGGACAGATGCATTCCACC
TGTTTTCCTTGACAGTGGCAATGCCGTTCTGATTTACAGCCTCCCGTGAC
CCTCCTACTGTGTATTAAAGTGCCTCTTTCAGACTTGACTTGGTCTCGCA
CATTTAGGAGAGCACTTAATTCACATTGACCTTGTTGCGCACACATAACT
GGGCGACGATTTTTCAGGAGTGCTGTCTACCCTCAGCACCCGAAGACCGC
CCCCGAAATCCCACATTTTATCTTTTATGCCTTAAGGTCCACGAAAAGCC
TATTCCCTCCTTCACTGGCCGTTGAAACCGATTTAATTCCAGGTCCGAAT
TTTGAAATTTTTAATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_f07.g1 MSMg01no097_f07.g1 CHROMAT_FILE:
MSMg01no097_f07.g1 PHD_FILE: MSMg01no097_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:02 2005
         (291 letters)



>mm_chr7_130788728_130789418
          Length = 691

 Score =  540 bits (279), Expect = e-158
 Identities = 288/291 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttggactggatgggaggtttcttcaggggtctacttggcagtttgtgtttcccagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggactggatgggaggtttcttcaggggtctacttggcagtttgtgtttcccagcat 260

                                                                       
Query: 61  tgacaattcaggcagaagcagggcagacttgctgactccttgggatttcagagcctggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaattcaggcagaagcagggcagacttgctgactccttgggatttcagagcctggtc 320

                                                                       
Query: 121 ccttgagcccagattttatgaccctgctctcattggcatggattcttttgtacatttggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgagcccagattttatgaccctgctctcattggcatggattcttttgtacatttggt 380

                                                                       
Query: 181 gttttgagcggccttcaaggctaggcaccacctccagctactcagtacccagaatgtgcc 240
           | ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 381 gctttgagcggccttcaaggctaggcaccgccaccagctactcagtacccagaatgtgcc 440

                                                              
Query: 241 cctgagtgatctgaggtctgcatggtgatgagcaatttgatgcctgttctt 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgagtgatctgaggtctgcatggtgatgagcaatttgatgcctgttctt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)