BAC Information

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BAC

Clone NameMSMg01-097O10
Chromosome7 (Build37)
Map Location 118,215,149 - 118,215,395
singlet/doubletsinglet
Overlap geneEif4g2
Upstream geneZfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9
Downstream geneLOC100043221, LOC100042658, LOC384658, Galntl4, LOC668399, LOC100042678, Usp47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O10.T7 (MSMg01no097_o10.b1)MSMg01-097O10.TJ (MSMg01no097_o10.g1)
ACCAG314216AG314217
length683792
length of high quality
(start - end)
93 (188 - 280)248 (126 - 373)
definitionCHROMAT_FILE: MSMg01no097_o10.b1 PHD_FILE: MSMg01no097_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:48 2005CHROMAT_FILE: MSMg01no097_o10.g1 PHD_FILE: MSMg01no097_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCAACCATCCGCGGAATCTATTATTTTCCACAACCTAAATGAATTGGG
GCTCCACAGTTTTCAGTGCTCATGACCATACACACAGCACAGCATCTGGT
TGCTACAGTACTGTAGGTGGTTCCTGCTTCCCAGCAAGTCTCTTCTTCCA
CCAAGAGTGCCATCCCTCCCTCCTCTGTGTTTCGTCTCTTTAAGGAGAAA
CTCAAATACCACTTCCTCCGGAATACCTGTACATCTTTCCTCTTCTCTAG
GGAGAAGTGGGCCCCTTCTTACCTTCGGCTTCCTAATATCTTTCATGAAG
GTCATTTATCAACTCTATCTACTCACTTCCCAACCTCCCCATAAAGCATA
ATCAACACCGAATACCAAGCCCAAGTCTATGTGATCCCTATCCTTTAGCG
CTCCAAAAAGGTGTGAAAATTCTGAGTATGAACCATGCGGAATCCTAGCC
AACAGCTCTTTCCCATGGGGATACCCCCTCCTGATTGCGGACAGTCCCTT
CTGGTTGCGCACCCCCGCCACTGGATGCAAACATTCCCTCCTGACTGGCC
ACACTCCCTCCTGGCGGCGCAAAATCCCCCTTGGCTGGGGATACTCCCTT
CCTGGCTGGGCACCCTCCCTTTTGCCTGCCCACCCTCCCTCCCGCCTGCG
GAACACTCCTTGGAATAACCGGTACCGCCCGCG
AATTGAAAATATTTGTGTGGACATCTTGTCTTGCGTGTTGCCACTCCTAT
NNCCCGATGCTGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCAGAAAAAATTTGGTTTTGAGGTATGGATTTATC
TCCGTTTAAGAACTTGTGAAATTTCTAATTTCATAGTCTTAATTAGCAGT
GATTGAGCCTGTAACACCCCTTAATTCAAGCATTAATTCTTTTTCACCTC
AGAACTATTCCCTATCAATCTAATGCAAACTGTCAACTTAATCTGACCTT
TACTATTACAGACCTTGTGTCACCTCTTTGGCTCTGCTTTCTAAGCGCCT
AAGGAATAAGATTGTCTCATCCTTCTATCTCTGCTGAGACACCTGTTTAG
CCCTTGATCTCCATTTGTTCTTTGCACCGGAACAACCTGAATAATAAGCT
GAAAACCACAACTGCTGCTCGGCTTACATATCATGAGACTTTCAAGGCGT
TCTTAAGTTGGGTTTCCTCACGCTGCTGCTTCATTTTTTCTTGCCCTTGC
GTACTCACGCTATTTTACGTGCCAAAACTGGGGGGTCACCCCCACGGCTA
AAACTTTCAAAAAGTGAATACTGCTGGCGGAAGAATTGAACCTTCTCTCT
TGCTCCCCAAATGCCCAATCGTTTGTGCCCTAAATCTGACTGTGTAAACA
TAAATTTTGTCACCCCCCCCCGTTTTTTTCTTACATCTAGTGGATTAGCA
TAAATTGGAATAGGTGGGCCAAATTATCCGCTTTTTACAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o10.g1 MSMg01no097_o10.g1 CHROMAT_FILE:
MSMg01no097_o10.g1 PHD_FILE: MSMg01no097_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:48 2005
         (248 letters)



>mm_chr7_118214949_118215596
          Length = 648

 Score =  416 bits (215), Expect = e-121
 Identities = 239/247 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggttttgaggtatggatttatctccgtttaagaacttgtgaaatttctaatttcata 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 447 tttggttttgaggtatggatttatctccgtttaagaacttgggaaatttttaatttcata 388

                                                                       
Query: 61  gtcttaattagcagtgattgagcctgtaacaccccttaattcaagcattaattctttttc 120
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 387 gtcttaattagtagtgattgagcctataacaccccttaattcaagcattaattttttttc 328

                                                                       
Query: 121 acctcagaactattccctatcaatctaatgcaaactgtcaacttaatctgacctttacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acctcagaactattccctatcaatctaatgcaaactgtcaacttaatctgacctttacta 268

                                                                       
Query: 181 ttacagaccttgtgtcacctctttggctctgctttctaagcgcctaaggaataagattgt 240
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 267 ttacagaccttgtgtcaactctttggctctgctttctaagcacctaaggaataagcttgt 208

                  
Query: 241 ctcatcc 247
           |||||||
Sbjct: 207 ctcatcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)