BAC Information

Click to search

BAC

Clone NameMSMg01-098I04
Chromosome7 (Build37)
Map Location 104,683,931 - 104,684,515
singlet/doubletsinglet
Overlap geneInts4
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14
Downstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I04.T7 (MSMg01no098_i04.b1)MSMg01-098I04.TJ (MSMg01no098_i04.g1)
ACCAG314672AG314673
length689765
length of high quality
(start - end)		588 (56 - 643)88 (268 - 355)
definitionCHROMAT_FILE: MSMg01no098_i04.b1 PHD_FILE: MSMg01no098_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:39 2005CHROMAT_FILE: MSMg01no098_i04.g1 PHD_FILE: MSMg01no098_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCTCTACCAGGAGAGGATCCGCGGAATTCATCTT
ACTGAATGAACAAGTTCTATTGGTTAATCAGGTGGCAAACAAAATTCATA
GATGTGCACAAATGATTATTAGGATGCATTTTTCCAAGATTAGATAGATG
ATAAGCTATCCTCACATGAGAGATGCGATGAAGACTGCAAGTGAGCCCTG
CGATTCCAGCCACCCCTCTCTCTTTCCTACCATCCATTCATGCATTGTGT
GCTTTCTTTAGTGTACACCACACTAAGTGCTGGAGCTATGGGGAGGCGAT
GAAGGTCAGTGCTTCAGCACACAGTTAGGCACACTGTAGGTCAAAGACAG
GAAGGCTCTGTGGAGGTCCCAGCAGGTGGTACAGCCTGAAACAATGTACA
AGAGCAAAAGGGAATTGAGGAAGGAGGTACTTTGAGGACTTTGAGGAGGT
AGGAATGAGGAAAGGATTGTGAGTGCTGGCAGGACAAGTAATCAGATGTG
AGATGACGCCTGCAGCAGGCCCAGCAGGCTTCCGGGAGGAGAGGGTAAGA
GCAAGTTATTCACCAGATGTCATTGTCCTGGAAGCTTCTAGCCTCCCTGC
AATCTCGGCTAGACCTAGAGTGTTTTCACCCTCTGAGACTTAGTGCTGAA
TAAACTCACCTTTTCCTTGTTCTTTCTGAACTCTGGCTG

NCCCCNNNNCCCCCCCCCCCCCCCCCCCNCCCCCCCNCCNCNCGTGGACA
CCCATCGATGCAGTGGGTAGCCTGGCGGCCGCCTTCCGACNCGCGGAGGN
GACCNANAGTTGCAACACAAGAGGCAGNCAGNNGACCNCNAGACNCCACN
TNGNCGGGCTGGTTTTTCCCANAACAACGGGGCNAAGGCGGNNNAGGNGG
GACAACACACAGGGAGGACGGGANAGCAGNCCNANCNNNCGANCACCCCA
NCCCCCATCGTACCCNTTGGATTCTTTTCAACAGAGGAATCTAAAGATTT
TTTTCCTCACATATATGTATATACCTACCTACATACAGTCAGATGTGAGC
CACCCGGCCTGTTTTTTTTTGTTCCAAGCCGCAAAGGCAAGAGGGAGGCG
CATTTTCTTTCCCCCCCCCCCCGCCCGTTCCAAGTGTTACGTCCTAAAAT
TTAGTTTGTTGCTAGAGAGACAAAAAGGCAGGTCCCCCGAGCCGGACCCG
ACCACGTGGTCAGCGGATTAACGTAGCTCATGATATCCCTCCTTCGATCT
CCCCGATCGCCCCCCATCTCCCTTCTAGTCTCCCCATTTCCCTTATTACT
ATCTCCCCCCCTCCTTTCACCCCCTCCTTCCCTTCCCTTCCCTTTTTCCC
CTCCCTCCCCCCTTCTTCCCTATTTCCCCACCTCCCCCCCCTATTCCCCT
TTCCCCATCTCTTTCTTTTTTTTTTTTTTTCCATTTCTCACTCCCCCCTC
CTCCACCCCTTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i04.b1 MSMg01no098_i04.b1 CHROMAT_FILE:
MSMg01no098_i04.b1 PHD_FILE: MSMg01no098_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:39 2005
         (588 letters)



>mm_chr7_104683731_104684715
          Length = 985

 Score = 1060 bits (548), Expect = 0.0
 Identities = 577/588 (98%), Gaps = 3/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacaagttctattggttaatcaggtggcaaacaaaattcatagatgtgcacaaatga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 201 atgaacaagttctatttgttaatcaggtggcaaacaaaattcatagatgggcagaaatga 260

                                                                       
Query: 61  ttattaggatgcatttttccaagattagatagatgataagctatcctcacatgagagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattaggatgcatttttccaagattagatagatgataagctatcctcacatgagagatg 320

                                                                       
Query: 121 cgatgaagactgcaagtgagccctgcgattccagccacccctctctctttcctaccatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgatgaagactgcaagtgagccctgcgattccagccacccctctctctttcctaccatcc 380

                                                                       
Query: 181 attcatgcattgtgtgctttctttagtgtacaccacactaagtgctggagctatggggag 240
           ||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||
Sbjct: 381 attcatgcattgtgtgctttctttagtgta---cacactaagtgctggagctgtggggag 437

                                                                       
Query: 241 gcgatgaaggtcagtgcttcagcacacagttaggcacactgtaggtcaaagacaggaagg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gctatgaaggtcagtgcttcagcacacagttaggcacactgtaggtcaaagacaggaagg 497

                                                                       
Query: 301 ctctgtggaggtcccagcaggtggtacagcctgaaacaatgtacaagagcaaaagggaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctctgtggaggtcccagcaggtggtacagcctgaaacaatgtacaagagcaaaagggaat 557

                                                                       
Query: 361 tgaggaaggaggtactttgaggactttgaggaggtaggaatgaggaaaggattgtgagtg 420
           || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgcggaaggaggtactttgagaactttgaggaggtaggaatgaggaaaggattgtgagtg 617

                                                                       
Query: 421 ctggcaggacaagtaatcagatgtgagatgacgcctgcagcaggcccagcaggcttccgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ctggcaggacaagtaatcagatgtgagatgacgcctgcagcaggcccagcaggcttccgg 677

                                                                       
Query: 481 gaggagagggtaagagcaagttattcaccagatgtcattgtcctggaagcttctagcctc 540
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 678 gaggagagggtaagagcaagttattcatcagatgtcattgtcctggaagcttctagcctc 737

                                                           
Query: 541 cctgcaatctcggctagacctagagtgttttcaccctctgagacttag 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cctgcaatctcggctagacctagagtgttttcaccctctgagacttag 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 985
Length adjustment: 10
Effective length of query: 578
Effective length of database: 975
Effective search space:   563550
Effective search space used:   563550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |