Query= MSMg01no098_k08.b1 MSMg01no098_k08.b1 CHROMAT_FILE:
MSMg01no098_k08.b1 PHD_FILE: MSMg01no098_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:49 2005
(582 letters)
>mm_chr7_28827871_28828852
Length = 982
Score = 1027 bits (531), Expect = 0.0
Identities = 567/587 (96%), Gaps = 14/587 (2%)
Strand = Plus / Plus
Query: 4 ggaattcctgattatctccctttcttggctaactccccgtagaagctgcctaaggcacag 63
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcctgaaaatgtccctttcttggctaactccccgtagaagctgcctaaggcacag 261
Query: 64 ggctgggtccccacatccagccaccgctcatgcctcacaatgacagataagccccaatca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggctgggtccccacatccagccaccgctcatgcctcacaatgacagataagccccaatca 321
Query: 124 aaccctacaggtacatgtggggggtggggtgaggctttttaaaagaatcagaatattaaa 183
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 aaccctacaggtacatgtggggggtggg------ctttttaaaagaatcagaatattaaa 375
Query: 184 tacaaaacaaaaattaaaagcacacatttctagaacacatgcagaatcagttaacaaaac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tacaaaacaaaaattaaaagcacacatttctagaacacatgcagaatcagttaacaaaac 435
Query: 244 tgaaatgtccagagactaagattacctgaccaacagataatcttaaattcatgtttgctc 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agaaatgtccagagactaagattacctgaccaacagataatcttaaattcatgtttgctc 495
Query: 304 tttgagccatacttg--------tttgtttgtttgtttgtttgtttgagaaaggaccttg 355
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgagccatacttgcttgtttgtttgtttgtttgtttgtttgtttgagaaaggaccttg 555
Query: 356 atacacagctcagccttgcctggggttaagtatgtagccaggctggtcttgaatttgtaa 415
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 556 atacacagctcagccttgcctggggttatgtatgtagccaggctggccttgaatttgtaa 615
Query: 416 ttctcctgttgcaagctctgcagggctgggattaaacacatttgcccagctctgaaccac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttctcctgttgcaagctctgcagggctgggattaaacacatttgcccagctctgaaccac 675
Query: 476 ttccccagccttggaagaaccaaaggctctaaggctctcttctcacataactgagagctg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttccccagccttggaagaaccaaaggctctaaggctctcttctcacataactgagagctg 735
Query: 536 gcagccaggctgaaccaggtttgctctgggccctgactgcacttgtt 582
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gcagccaggctgaaccaggtttgctctgggccctgactgcacttgtt 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no098_k08.g1 MSMg01no098_k08.g1 CHROMAT_FILE:
MSMg01no098_k08.g1 PHD_FILE: MSMg01no098_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:49 2005
(431 letters)
>mm_chr7_28954737_28955567
Length = 831
Score = 754 bits (390), Expect = 0.0
Identities = 412/420 (98%), Gaps = 2/420 (0%)
Strand = Plus / Minus
Query: 14 gaactttctattgtcaaagccagaactctcgccatcatccaccatacagtgggctcatca 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaactttctattgtcaaagccagaactctcgccatcatccaccatacagtgggctcatca 772
Query: 74 g--aaaaacgcgggaaataggtgagatggatacatttgtcaggccagccgtggtggcgca 131
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gaaaaaaacgcgggaaataggtgagatggatacatttgtcaggccagccgtggtggcgca 712
Query: 132 cgcctttaatccccgtactctggaggtaaaggctggtggatcccggccagctagggtcac 191
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 711 cgcctttaatccccgtactctggaggtaaaggctggtggatctcggccagctaggatcac 652
Query: 192 gtgacaagacgctctgaaaatccagacctaaaccaacccctctcaattccaatcacctac 251
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 651 gtgacaagacgctctcaaaatccaaacctaaaccaacccctctcaattccaatcacctac 592
Query: 252 cccgctaatagccgggctagtaaagtcgctctcactacagagcagggactcccaggtccc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cccgctaatagccgggctagtaaagtcgctctcactacagagcagggactcccaggtccc 532
Query: 312 cagagcctctactcctacaagccttgggtcccgcccctcccggaagcgcggcgagcgcca 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cagagcctctactcctacaagccttgggtcccgcccctcccggaagcgcggcgagcgcca 472
Query: 372 gcctgtgctcgcgagcgccgcacaccacggagccggagattctcatttacccggggggaa 431
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 471 gcctgtgcacgcgagcgccgcacaccacggagccggagatcctcatttacccggggggaa 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
