BAC Information

Click to search

BAC

Clone NameMSMg01-098N01
Chromosome7 (Build37)
Map Location 136,584,750 - 136,585,273
singlet/doubletsinglet
Overlap genenone
Upstream geneTial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714, LOC100043144, Ppapdc1a
Downstream geneBrwd2, LOC100043150, Fgfr2, LOC546005, Ate1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098N01.T7 (MSMg01no098_n01.b1)MSMg01-098N01.TJ (MSMg01no098_n01.g1)
ACCAG314899AG314900
length690687
length of high quality
(start - end)
459 (52 - 510)524 (55 - 578)
definitionCHROMAT_FILE: MSMg01no098_n01.b1 PHD_FILE: MSMg01no098_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005CHROMAT_FILE: MSMg01no098_n01.g1 PHD_FILE: MSMg01no098_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTCCGTTTTTATTCTGTCTCTTTTATGCTAAACCAACTTTTAATTTTCAG
GATAAATTGAACTTGGTCATGGTAAATAATTCTATTGCATGTTGCTGGGT
TCAATTTGCTAAATGTCTATTGATGAAGAGTTTACATTTAAACACATGCA
ATATATTGGTTAGTAGTTTTCTCTTCTTATAAAGTCAAGTTTTAATAGGA
GGGAAATACTAGTCTCTAGAGATGATTTGGGAAGTGTTCCAACCTTTTCC
ATTTGGGAAGCTTGTCTTCGATTCTTTAACTGTTTAGCAGAGTCACCACT
GTGATTCTCGAGCCTTGAAGACCTTCTGGGAAGGTCTTGTGTGTAAGCAG
TCCATGCTTGTTATTGATCTATTCAGATTTTCTATTTCTTCTTGAGTCAG
TTTTGTTTGGTTGTGTTTTATTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCCCACCCTACACCCCAATCTATTCCACCCCCCTTTATTC
CCTTCCCCCTCCTTTTCCCTCTCCCCCTCTCTCTCCCTCATCCCCTCTTC
CACCCTTCCCTCTCTCTCCCCCTATTTTTACATTTATCCCCTCTCCCTTA
TCTCCTCTCCACTTTCCCCTCCCTTTATTTCTTTTCTCTC
GGCGGCCGCCTGTCAAACCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGAATCCTGAGAGTCCTGAGGCACCCTTCACACTTGAACAGTCTGC
CCGCAAAGAAAGCGGCAGGGCCCTGTGATCTTTTATTACTTCGGGTGACA
TCTTGTGAACAAATAGTGCGAAAGAGCGAGAGGTCCCAAGGAGTGGGGCT
GAGAAAAGAGGGCATGGGAGCACAGATGGCATTGTAAGATCAGGCCTGGG
TTATACATCACACAAGGGCAGCCAAAAGCACTACTCTGGAGTCTGGTTTT
GCAAAACTCTTCCCCACCTGCTCCAACCACAGAGTAGGATAAGGAGTGGG
ACAGTCCCAGCTTCCTGAAAAGTCAGAAGTGTATCTTCTGTCTGGGAGCT
CAGCAAGACATTTGCAGGCATGTGTGGTGTTTAAAACTGATCAATGAGGC
ACCAGGTAGAGAGTCACCCCTGTAAGGATCTCCCTGAACAACTCACAGAG
ATGTGCAAGGGCTCTTTGGGGACAGCATGGCCCAAATAAACCCTTCCCCA
CTTAAAGTGTTTTTGTCAAGTATTTGTAGCAACCAAACATGTAACCAAGA
CTTTTTTTTTCTTTATTTCCCCTCTGAGCCTGTTTGCAACTTTTTACTAA
AGTTTTGGATCTGGTAAATTTACCCAGGGACTGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_n01.g1 MSMg01no098_n01.g1 CHROMAT_FILE:
MSMg01no098_n01.g1 PHD_FILE: MSMg01no098_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:02 2005
         (524 letters)



>mm_chr7_136584550_136585473
          Length = 924

 Score =  982 bits (508), Expect = 0.0
 Identities = 520/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatcctgagagtcctgaggcacccttcacacttgaacagtctgcccgcaaagaaagcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatcctgagagtcctgaggcacccttcacacttgaacagtctgcccgcaaagaaagcg 260

                                                                       
Query: 61  gcagggccctgtgatcttttattacttcgggtgacatcttgtgaacaaatagtgcgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagggccctgtgatcttttattacttcgggtgacatcttgtgaacaaatagtgcgaaag 320

                                                                       
Query: 121 agcgagaggtcccaaggagtggggctgagaaaagagggcatgggagcacagatggcattg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcaagaggtcccaaggagtggggctgagaaaagagggcatgggagcacagatggcattg 380

                                                                       
Query: 181 taagatcaggcctgggttatacatcacacaagggcagccaaaagcactactctggagtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagatcaggcctgggttatacatcacacaagggcagccaaaagcactactctggagtct 440

                                                                       
Query: 241 ggttttgcaaaactcttccccacctgctccaaccacagagtaggataaggagtgggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttttgcaaaactcttccccacctgctccaaccacagagtaggataaggagtgggacag 500

                                                                       
Query: 301 tcccagcttcctgaaaagtcagaagtgtatcttctgtctgggagctcagcaagacatttg 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccagcttcctgaaaattcagaagtgtatcttctgtctgggagctcagcaagacatttg 560

                                                                       
Query: 361 caggcatgtgtggtgtttaaaactgatcaatgaggcaccaggtagagagtcacccctgta 420
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 561 caggcatgtgtggtgtttaaaactggtcagtgaggcaccaggtagagagtcacccctgta 620

                                                                       
Query: 421 aggatctccctgaacaactcacagagatgtgcaagggctctttggggacagcatggccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggatctccctgaacaactcacagagatgtgcaagggctctttggggacagcatggccca 680

                                                       
Query: 481 aataaacccttccccacttaaagtgtttttgtcaagtatttgta 524
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aataaacccttccccacttaaagtgtttttgtcaagtatttgta 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)