BAC Information

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BAC

Clone NameMSMg01-098P08
Chromosome7 (Build37)
Map Location 116,010,172 - 116,010,528
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516
Downstream geneOlfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098P08.T7 (MSMg01no098_p08.b1)MSMg01-098P08.TJ (MSMg01no098_p08.g1)
ACCAG315006AG315007
length775778
length of high quality
(start - end)
363 (103 - 465)215 (138 - 352)
definitionCHROMAT_FILE: MSMg01no098_p08.b1 PHD_FILE: MSMg01no098_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:13 2005CHROMAT_FILE: MSMg01no098_p08.g1 PHD_FILE: MSMg01no098_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTGTTTTTNTCNTCTTTCCCTTCTCTTCTTTTCCGCCACTAT
CCCNCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAG
GATCCGCGGAATTCCACTCTCTCCCCATCCTTACAGGCTCATGACACCAG
TGTCACCAAAGGCTATGTGGGAATGGAAATGCTCCAAGTATCTGGCAGGT
TGTCAGGAACACCTGGCCCCAGAAGTCATATTGGCCAGAAGATAAAATCC
AAGTCTTTGTCCATTATGACTTAGATGCTATTGTGAAAATAGGAAACTTG
ATTTTGTCTCCACCCGTGGTCTCCCATGTACACCTACAGACACACACACC
TCCCCAGTGCAGCCATGCCTCTCACCTCTGGCCTCAGCCTGCCTCCTCAG
CCTCATGCTATGCTTCTGGAAGATATAGTTCTCCTGTCATGTGCTTTCTC
CCTCCCTTCTACTCAGGGATCCAACTCCAGCATGGCTGACCTGACACTCA
TGCCTGATTCCAGTCTTTGCCAAAGTGGCAAATCTGATCATTTCTCACTT
AGATTCACTTTCAATTTTATTTGCAAAGGTTTCTGTCATCTTGATGATGC
ATGGCACACCCTTATTTTTATATATAAACATTCTTCAAGAATGCTTTTAG
TCTGTGGACCTAAGCCCCCACGGATGTATTCCTGCGCGGCAAATAGCCGC
CCGAAATCACCTGTACTTATCACTGATGCCCGCCACTGTTTTTCCTTAAC
AAAATTCCACTTTATTCCGACATCT
NNNNNNNNNNNNNNNNNNNNNNTTTCCCCCCTTCCCCCCCCCTCTCCCCC
GTCCCNNNNCTCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGGTAAAGGG
AGAAAAACAGAGGCTGCCATCTAGGAGCTAATTCAAGATAAGAAGGGAGG
GGTGTCATTCAGTGGTAGAGCACTTGTCTAGCGAGCAGAAGGCCCTGGGC
TGGGTGTGGTGCAGTACTCCTATAAGCCCAGCCCTAGGAAGACTAAGGCA
GGAGGACTGGAGTTCAAGGTCAGCCTGGACTACCTGACACCCTGTCTTAA
AACAAAACAACAAAAACAACAGAAAACAAAAATTTTTGCCATCTTTCTGC
CCTGATAGAAGCTTCTTCTCCTCTATTACCCTGAGAACTTCCGAGCCAGC
CTGGTCCCGGATAAGAACAGGATGACCCCCCTTCAGATCCCTGAGCAGGG
CCAGGCCTAAGTGACAATCATAGGAGCCTAAGCAGCGGCACCACTCACTA
CTAACCAATCCCAAGAAGGTCAGTCTTTCTGCCAGGACTCGTCTCTGCCA
CCTCATTACCGTCCTCACATCTGATTCTTCTACCTTTCAACTCTTTTGGG
AAAAAGTTGGCTCTTCCGCGTCCCCATCCTTCCCTATCGCACGCTTCAGC
CTTCCATGGCTGACTATGGGATATACCTGCCCCGCCCCGGTATTTAGCCC
CCCCCTCGCCCACACGTTCCAAACCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_p08.b1 MSMg01no098_p08.b1 CHROMAT_FILE:
MSMg01no098_p08.b1 PHD_FILE: MSMg01no098_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:13 2005
         (363 letters)



>mm_chr7_116009966_116010728
          Length = 763

 Score =  598 bits (309), Expect = e-175
 Identities = 346/359 (96%), Gaps = 4/359 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccactctc--tccccatccttacaggctcatgacaccagtgtcaccaaaggctat 64
           ||||||||||| |  | |||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 207 gaattccactc-cagt-cccatccttacaggcttaggacaccagtgtcaccaaaggctat 264

                                                                       
Query: 65  gtgggaatggaaatgctccaagtatctggcaggttgtcaggaacacctggccccagaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgggaatggaaatgctccaagtatctggcaggttgtcaggaacacctggccccagaagt 324

                                                                       
Query: 125 catattggccagaagataaaatccaagtctttgtccattatgacttagatgctattgtga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catattggccagaagataaaatccaagtctttgtccattatgacttagatgctattgtga 384

                                                                       
Query: 185 aaataggaaacttgattttgtctccacccgtggtctcccatgtacacctacagacacaca 244
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 385 aaataggaaacttgattttgtctcgacccatggtctcccatgtacacctacagacacaca 444

                                                                       
Query: 245 cacctccccagtgcagccatgcctctcacctctggcctcagcctgcctcctcagcctcat 304
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 445 cacctccccagtgcagccatgcctctcacccctggcctcagcctgcctccccagcctcat 504

                                                                      
Query: 305 gctatgcttctggaagatatagttctcctgtcatgtgctttctccctcccttctactca 363
           || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccatgctcctggaggatatagttctcctgtcatgtgctttctccctcccttctactca 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)