Query= MSMg01no100_h04.b1 MSMg01no100_h04.b1 CHROMAT_FILE:
MSMg01no100_h04.b1 PHD_FILE: MSMg01no100_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:18 2005
(473 letters)
>mm_chr7_96301930_96302801
Length = 872
Score = 816 bits (422), Expect = 0.0
Identities = 452/468 (96%), Gaps = 11/468 (2%)
Strand = Plus / Plus
Query: 6 gaattcacaatatattccatatacttggtgaggccaagataggtaggaatggtctagaaa 65
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcacaatatagtgcatatacttggtgaggccaagataggtaggaatggtctagaaa 265
Query: 66 gcaccaccaataaaacaatagctgaagcagaacacaccttactctaacaatggccatgcc 125
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 266 gcaccaccaataaaacaatagctgaagcagaacacacctta-tctaacaatggccatgcc 324
Query: 126 attcatttctcttttaaagcatttagtcattactttatgtgtatgacttttgcctacatg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcatttctcttttaaagcatttagtcattactttatgtgtatgacttttgcctacatg 384
Query: 186 tgtggatgcatgtatgtgtatgtcatatatgtatgtgcctgggcacatgaaggccagaaa 245
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 385 tgtggatgcatgtatgtgtatgtcacatatgtatgtgcctgggcacatgaaggtcagaaa 444
Query: 246 agggcaccagacctcctggaaaagaagttacagatgactgtgacctaccatgtagatact 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agggcaccagacctcctggaaaagaagttacagatgactgtgacctaccatgtagatact 504
Query: 306 atgaccccaactaggatcttctggaagagcagccaggaagttcttaactacagagcaatt 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaccccaactaggatcttctggaagagcagccaggaagttcttaactacagagcaat- 563
Query: 366 tctccaccccggccttattaacgtctcactttcttctttttggcataagcttaccttgta 425
|||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 ---------cggccttattaacgtctcactttcttctttttgggataagcttaccttgta 614
Query: 426 tatactaacaaaagatccaaggaaagcccccagctggaagttctcctt 473
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tatactaacaaaagatccaaggaaagcccccagctggaagttctcctt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_h04.g1 MSMg01no100_h04.g1 CHROMAT_FILE:
MSMg01no100_h04.g1 PHD_FILE: MSMg01no100_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:18 2005
(130 letters)
>mm_chr7_96403394_96403923
Length = 530
Score = 252 bits (130), Expect = 8e-72
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 1 ctatcaactctagagtgcggacacttaattggactagaagggaacatcacaattagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ctatcaactctagagtgcggacacttaattggactagaagggaacatcacaattagagaa 271
Query: 61 tattggttttaattactaagtagacatatatactgtatgtatttataacatttattttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tattggttttaattactaagtagacatatatactgtatgtatttataacatttattttcg 211
Query: 121 aattctaaat 130
||||||||||
Sbjct: 210 aattctaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space: 63684
Effective search space used: 63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
