BAC Information

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BAC

Clone NameMSMg01-100P06
Chromosome7 (Build37)
Map Location 27,862,702 - 27,863,200
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp2b13, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881, LOC623830, Cyp2b19, Cyp2g1, LOC100043745, Cyp2a5, EG233005, EG330491, Cyp2a12, LOC100043199
Downstream geneCyp2f2, Gm1450, Egln2, Rab4b, Mia1, Snrpa, Itpkc, Adck4, Numbl, Ltbp4, Shkbp1, Spnb4, Blvrb, EG668045, Sertad3, Sertad1, Prx, Hipk4, Pld3, 2310022A10Rik, Akt2, Ttc9b, Map3k10, C030039L03Rik, Zfp60, LOC100043229, LOC100043233, 4933426I21Rik, Zfp59, 4732475C15Rik, Prkcz2, 1700049G17Rik, EG668175, LOC100043771, Zfp780b, C130069I09Rik, LOC100043772, Psmc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100P06.T7 (MSMg01no100_p06.b1)MSMg01-100P06.TJ (MSMg01no100_p06.g1)
ACCAG316495AG316496
length664789
length of high quality
(start - end)		512 (55 - 566)245 (129 - 373)
definitionCHROMAT_FILE: MSMg01no100_p06.b1 PHD_FILE: MSMg01no100_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:59 2005CHROMAT_FILE: MSMg01no100_p06.g1 PHD_FILE: MSMg01no100_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAACGACTCCTATATCCAGAGATCCGCGGAATCAGTGTGGTCT
CCCCACCATGTGGATGCTGGGAATCAAACTGGATCCTCTGGAAGAGCAGC
TGGTGCCCTTAACCACAGAGCCATCTCTTCAGGCCTCTCATTTTGATACT
TTCATAAATGAGTGCAAAGAATTAGGATCATATTTGCCACCATTACCCTC
TCTTTTCCCCTCCCTGATTTCCTTCCTCTTTCTAACCAGTCTTAGGGATC
AAACATTTAACACATAGGTCTTTGGGAGGTACATTCAAGACCTAAACCAT
ATCAACTTGCTTTAGAGGTTCTATGTAACCATCCCAGAGGTTCCTGTGTT
CACAGATAAGCAGTAGGGGAACCAGGAATGTCAAACACATAGGGTTGTTA
CTTTAAAGGAAGAGATGCACAACCTGTTGCTTGCCCAGAAGGCCAGGAGC
AGATGTGGCTAGTAGCCCGGTGACCTCAATGCTATTTGTGGTCGAGGCCA
CATTGAATCTTCCCTAAGACTCTTCTCATGAGCTTCTTTTTCTGAGGGAA
CCTACTGACCTCATCTTTATGGAAGATGTTCCATGTACTTGACCAAGAGT
TTCAGTGAAGTCAATCTTAAGGTTTATTGTGCACATGTGATTTGTTGGCA
GCCCGCCTCACATT

TTTTTTCCCCNNNNNNNNNTTTNNCCCCCCNNCCCCNNNNCCCGGCCTNN
NNNCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTGGTGAGATACTAGCTCA
GGCAAGAAGTGGTGCCGAAATCCAGCCAATTATCATCACCAGGTGCTGAT
AGGAGACCCCCGTTTCACGGGGCGGGTTCAGAACTATGGGACACTTTACA
GCTCTACAAGGTACGTTCAGTCTTGAACTTTCTCCAGCGTTAGAAGCCTT
TCTGTTCCTTTTCACAGGGCTCGTTCTTTTTCTTTTGATTACATACTGTT
TCCACTGGCGGTATTGCTGACTGGTTCTCAGTCACAGTCAGGCCTGGACA
GCGACCAGTATGGTTTCTTCCCACTCTGCGGCGACCGCCTTACGGTCGGT
CCTGAAGCAGCGTGGCTTGCAAGTCACCACCAAGACACTAGAAGGCTTTG
TAAAAGAGTTACATCTCATATCACCGTGGTTTGCGTGTTCTAAGTCCTCT
TGGTAGAAACTCAAGGCAGATTTAGCCACCGCAACTGGAGAACGCGTTAC
TTAAAGTAGGAACCATGCCGTCTTGCAAGCTGTACATAACATGTTTATAG
GATGATTTAATGTTAACATGCTGTCTTAAGGCATGGCCAGTTATTTCTGG
TATGACCCTTCATTACTCTTTTTTCTCACTCTCTGACTTCTCACCCAATA
TTATCATCCAACACACATCCTTTGTTTCCCCCTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_p06.b1 MSMg01no100_p06.b1 CHROMAT_FILE:
MSMg01no100_p06.b1 PHD_FILE: MSMg01no100_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:59 2005
         (512 letters)



>mm_chr7_27862653_27863566
          Length = 914

 Score =  884 bits (457), Expect = 0.0
 Identities = 488/499 (97%), Gaps = 2/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaatcaaactggatcctctggaagagcagctggtgcccttaaccacagagccatctctt 75
           |||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 548 ggaatcaagctggatcctctggaggagcagctggtggccttaaccacagagccatctctt 489

                                                                       
Query: 76  caggcctctcattttgatactttcataaatgagtgcaaagaattaggatcatatttgcca 135
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 488 caggcctctcattttgatactttcataaatgggtgcaaagaattaggatcatatttgcca 429

                                                                       
Query: 136 ccattaccctctcttttcccctcc--ctgatttccttcctctttctaaccagtcttaggg 193
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 428 ccattaccctctcttttcccctcccactgatttccttcctctttctaaccagtcttaggg 369

                                                                       
Query: 194 atcaaacatttaacacataggtctttgggaggtacattcaagacctaaaccatatcaact 253
           ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 atcaaacatttaacacataggcctttgggaggtacattctagacctaaaccatatcaact 309

                                                                       
Query: 254 tgctttagaggttctatgtaaccatcccagaggttcctgtgttcacagataagcagtagg 313
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 308 tgcattagaggttctatgtaaccatcccagaggttcctgtgttcacagataagaagtagg 249

                                                                       
Query: 314 ggaaccaggaatgtcaaacacatagggttgttactttaaaggaagagatgcacaacctgt 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ggaaccaggaatgtcaaacacatagggttgttactttaaaggaagagatgcacaacctgt 189

                                                                       
Query: 374 tgcttgcccagaaggccaggagcagatgtggctagtagcccggtgacctcaatgctattt 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgcttgcccagaaggccaggagcagatgtggctagtagcccggtgacctcaatgctattt 129

                                                                       
Query: 434 gtggtcgaggccacattgaatcttccctaagactcttctcatgagcttctttttctgagg 493
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 128 gtggtcgaggccacattgaatcttccctaagacccttctcatgagcttctttttctgagg 69

                              
Query: 494 gaacctactgacctcatct 512
           |||||||||||||||||||
Sbjct: 68  gaacctactgacctcatct 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space:   453808
Effective search space used:   453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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