CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATATATTCCTGTTTTAATAAAATTGACCCCAAGTTCCTCCTACTTT
ATTCCTTCTCTACCCTTATGCCATTTTTCCAATTTCATATGATTTGTTTA
AAACCTCCTGTGTTCATTTAGAGCTCACTTCATGTGTATGACTATAGGAC
TATCTATTTCAGTGGCTCCCAATGTCCACAGGGGCCAAATATCACATACC
TTACAAATCAGATATCTACATTATGATTCATAACAGTGATGTAATTAAAG
TTATAATCTAGCAACAAAAATAAATTTATGGTTGGGGGCCACAGCAAGGT
GAGGAACTGGATTAAAGGTTTGCATCATTAGAGAAGTTGAGAACCTCTAA
TCTATTGGGTCATGTGTAACCACTCCAAGAAAACATCCCTAAAGAAAACA
GACACATATTCTACCAGGAGTCATCAATTGTCGATATCTCTTGAGCCAGG
CACTGGGCTTTCAAGAGCCCTGCCCTTTTCTATGTGGGCTTTTGATTGAC
TTGACCTACATGTCGTGCACATGGAAATGCTAATGCTTTTTTTATTAGAC
ATTTTCTTTATTTACATTTCAAATGCTATTCCCAAAGCCCCCTATATTTT
CCACCCACTCTTGCTTGCTAGCCCTGGCATTCCCCTGTACTGGGGCATAT
GATCTTCT

CATATTTTTANNANTNNNCNNNNATATTATAANCCCCCCCNCNCCCCCTC
ATATCNNTTTTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGATTACTGATAT
CATGATCATCTTCACTCAGATATAACCATATTATTATGATAGCCAGAAAA
TTCTAGTGGGTAGATTTAGAGAAAATAAGAATAAACCACAGCGATTTTCC
AGAAAATGGAAAAGAAATCTTTGCTTAGAATCAGACTTAATTATTATTTA
CTGAGAAAAAACATACAAAACATGACAACAGTCTTTAGCATTCAATTTCA
ACATTCTCCAAATATCACTGTTTTAAAGGCATATTTTGTAAGAGCAAATT
AAAGTGCCGCATTGTTTCTTGCTAATATGTTTCATAGTTTTGTTCTTTCT
TCCATCCTTCCTTCCTTCCATCCTTTCTTATTTCCTTCCTTCCTTAATAC
CATCCTACATTCCTCTCTTCCTTTTTTCCTCTATTTCTTCTTTCCTTTCT
TTCTTCTCTTATCCGTATATCTTATTTTCTATTTTTTCTTTCTTTTTATC
CTTCTGCTTTTTTCTTATTCACCTCGACCTCTCTATAAAATACTTACATT
ACACTTCTACTCCACACGCACCCCTCACCAAATAAACAACAATCTTTATA
AACTATTAATATGTAGTCTTATCTTCTAATCCCCCCTTTCCCTCTATCTT
CCTATAAACCTCAAACTTATTACAACCCCTTTTACTTTTAATATTTCTCT
TCACTACCATTTTTATTATTACATAA

Query= MSMg01no101_a03.b1 MSMg01no101_a03.b1 CHROMAT_FILE:
MSMg01no101_a03.b1 PHD_FILE: MSMg01no101_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:03 2005
         (581 letters)



>mm_chr7_101114728_101115708
          Length = 981

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 71  tatgatttgtttaaaacctcctgtgttcatttagagctcacttcatgtgtatgactatag 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tatgatttgtttaaaacctcctgtgttcatttagagctcacttcatgtgtatgactatag 922

                                                                       
Query: 131 gactatctatttcagtggctcccaatgtccacaggggccaaatatcacataccttacaaa 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gactatctatttcagtggctcccaatgtccacaggggccaaatatcacataccttacaaa 862

                                                                       
Query: 191 tcagatatctacattatgattcataacagtgatgtaattaaagttataatctagcaacaa 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcagatatctacattatgattcataacagtgatgtaattaaagttataatctagcaacaa 802

                                                                       
Query: 251 aaataaatttatggttgggggccacagcaaggtgaggaactggattaaaggtttgcatca 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaataaatttatggttgggggccacagcaaggtgaggaactggattaaaggtttgcatca 742

                                                                       
Query: 311 ttagagaagttgagaacctctaatctattgggtcatgtgtaaccactccaagaaaacatc 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttagagaagttgagaacctctaatctattgggtcatgtgtaaccactccaagaaaacatc 682

                                                                       
Query: 371 cctaaagaaaacagacacatattctaccaggagtcatcaattgtcgatatctcttgagcc 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctaaagaaaacagacacatattctaccaggagtcatcaattgtcgatatctcttgagcc 622

                                                                       
Query: 431 aggcactgggctttcaagagccctgcccttttctatgtgggcttttgattgacttgacct 490
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcactgggctttcaagagccctgtccttttctatgtgggcttttgattgacttgacct 562

                                                                       
Query: 491 acatgtcgtgcacatggaaatgctaatgctttttttattagacattttctttatttacat 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatgtcgtgcacatggaaatgctaatgctttttttattagacattttctttatttacat 502

                                          
Query: 551 ttcaaatgctattcccaaagccccctatatt 581
           |||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaatgctattcccaaagccccctatatt 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no101_a03.g1 MSMg01no101_a03.g1 CHROMAT_FILE:
MSMg01no101_a03.g1 PHD_FILE: MSMg01no101_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:04 2005
         (170 letters)



>mm_chr7_100984983_100985552
          Length = 570

 Score =  321 bits (166), Expect = 1e-92
 Identities = 169/170 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactgattactgatatcatgatcatcttcactcagatataaccatattattatgatagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgattactgatatcatgatcatcttcactcagatataaccatattattatgatagcc 260

                                                                       
Query: 61  agaaaattctagtgggtagatttagagaaaataagaataaaccacagcgattttccagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaattctagtgggtagatttagagaaaataagaataaaccacagcgattttccagaa 320

                                                             
Query: 121 aatggaaaagaaatctttgcttagaatcagacttaattattatttactga 170
           ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aatggaaaagaaatctttgcttagaatcaaacttaattattatttactga 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)