BAC Information

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BAC

Clone NameMSMg01-101N22
Chromosome7 (Build37)
Map Location 17,485,253 - 17,485,774
singlet/doubletsinglet
Overlap genenone
Upstream geneCrxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8
Downstream genePtgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N22.T7 (MSMg01no101_n22.b1)MSMg01-101N22.TJ (MSMg01no101_n22.g1)
ACCAG317167AG317168
length736731
length of high quality
(start - end)
573 (70 - 642)205 (73 - 277)
definitionCHROMAT_FILE: MSMg01no101_n22.b1 PHD_FILE: MSMg01no101_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:15 2005CHROMAT_FILE: MSMg01no101_n22.g1 PHD_FILE: MSMg01no101_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGTGGATGTTTTATAACTAGATAAATCTGACCCCAGCCCCCGGGTTTTG
TTTGTTTGTTTGTTTGAGATGGTGTCCCTTCCTGGGACCTAGGGTTTACA
GATTTAGCTAGATTGCCTAACCAGTGAGTGTCAGCCGCCGAGTCTCTGCC
TCCCCAGCAGTGAGATTACAACTGAGTTTCACCATTCCCAGCTTGTTACA
TTGTTGCTAGGGTTTTAACTGAGGCTCCTATGACAAGCACCTGACTGCCA
GAGCCACCACACTAGCCCCTCCCTAGTTTCAATGGAAACAACATTTCCCT
TTTCATTCCACTGTCAGAAGTCCCTAAGCAGCCCCCAGGGTGAATGGCAA
CTCTGATTCCTTAGCCTATTGTTCTGTAGCTGTTCCTCCAACCAAAAATT
TTCTCCTCTGGAGGGAAGAGGGAGGCACCTAAGACACAAAAAAACAAAGG
AACTGTCAAGGCCTAGGAAGCTTAGAAAGTCAGAGTCCATATGCACACAC
ACATGTGTATATGTGCACTGGCACTGACACAAGCATTGTGTACACAAGGA
CATGCAAAAACATCTTTGCATACCTGTACTCATACATGCACGTACAATGT
GCAAACAAGTAACTATGTGCACATGATCATTCATACACACTCAACCCAGG
CACCACACACAGAACCCAGACACCACACACACGTGA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCCTTCCAATTCTAATAGAAACATGGATTGAGCGCTTCTGTATC
CAACAATGAGGGCCATAACTTGTTGTCCAATGGTAGTGCCTGTCATCCCC
CAGTGGGGCGTGGCTCAATGAGAGCACTTGTCCAGAATCCCCCAGGCTCA
CACAGGCCTTCAGTGCTTCCCCAGGATCTCTGACAGGGGATCTGTCAGAG
ATCCCCTATCCCTGATAAGATGGAGATTCTTGGGAAACTTGATTTGAAGG
TAAGGAAGTGGCTTCCGGGATGTATTGTATATAAGATGAACTAAAGCCTG
GGGCTTGGTCAGACACTCACTGCAACCGGGGCCACAGCCCATGTTTAGAA
TGACGCATCAGGGTCCCAGGGAGGGAGGCAGCCTTATAGAGCTGGCCACA
GGCGAGAGCCTGGGCCCTGAAATATCTCCCATATAATGTCTCGTGCTGCC
CTCCCTGAGTTGTGTTCCCCCGTATCTCTCATTCCCTCCCCTGTCTGTTC
TATATCCGATCCACCCCTATCTCTAAACCGGTTTGTTAAAAACTCTGCTT
GGTCCAGCGTCTCTTGTCCGTCTGATGATGCCCTACACCCCAATCTTTTC
ATGTAAGTGGTCCCTCCTGCCTCCCTTCCTGCAACTGCCCAGTCCTCCCA
CTTTTGTGGAAGTGACTGGAACCCCCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n22.b1 MSMg01no101_n22.b1 CHROMAT_FILE:
MSMg01no101_n22.b1 PHD_FILE: MSMg01no101_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:15 2005
         (573 letters)



>mm_chr7_17484803_17485774
          Length = 972

 Score =  951 bits (492), Expect = 0.0
 Identities = 516/524 (98%), Gaps = 3/524 (0%)
 Strand = Plus / Minus

                                                                       
Query: 51  tggtgtcccttcctgggacctagggtttacagatttagctagattgcctaaccagtgagt 110
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 tggtgtcctttcctgggacctagggtttacagatttagctagattgcctaaccagtgagt 913

                                                                       
Query: 111 gtcagccgcc-gagtctctgcctccccagcagtgagattacaactgagtttcaccattcc 169
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 gtcagccgcctga-tctctgcctccccagcagtgagattacaactgagtttcaccattcc 854

                                                                       
Query: 170 cagcttgttacattgttgctagggttttaactgaggctcctatgacaagcacctgactgc 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 cagcttgttacattgttgctagggttttaactgaggctcctatgacaagcacctgactgc 794

                                                                       
Query: 230 cagagccaccacactagcccctccctagtttcaatggaaacaacatttcccttttcattc 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 cagagccaccacactagcccctccctagtttcaatggaaacaacatttcccttttcattc 734

                                                                       
Query: 290 cactgtcagaagtccctaagcagcccccagggtgaatggcaactctgattccttagccta 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cactgtcagaagtccctaagcagcccccagggtgaatggcaactctgattccttagccta 674

                                                                       
Query: 350 ttgttctgtagctgttcctccaaccaaaaattttctcctctggagggaagagggaggcac 409
            |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 673 ctgttttgtagctgttcctccaaccaaaaattttctcctctggagggaaaagggaggcac 614

                                                                       
Query: 410 ctaagacacaaaaaaacaaaggaactgtcaaggcctaggaagcttagaaagtcagagtcc 469
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctaagacagaaaaaa-caaaggaactgtcaaggcctaggaagcttagaaagtcagagtcc 555

                                                                       
Query: 470 atatgcacacacacatgtgtatatgtgcactggcactgacacaagcattgtgtacacaag 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 atatgcacacacacatgtgtatatgtgcactggcactgacacaagcattgtgtacacaag 495

                                                       
Query: 530 gacatgcaaaaacatctttgcatacctgtactcatacatgcacg 573
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gacatgcaaaaacatctttgcatacctgtactcatacatgcacg 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space:   541606
Effective search space used:   541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)