BAC Information

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BAC

Clone NameMSMg01-101O08
Chromosome7 (Build37)
Map Location 61,336,069 - 61,336,199
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1865, LOC100040718, LOC668789
Downstream geneMrps33p, LOC622146, Luzp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101O08.T7 (MSMg01no101_o08.b1)MSMg01-101O08.TJ (MSMg01no101_o08.g1)
ACCAG317186AG317187
length795988
length of high quality
(start - end)
138 (238 - 375)---
definitionCHROMAT_FILE: MSMg01no101_o08.b1 PHD_FILE: MSMg01no101_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:17 2005CHROMAT_FILE: MSMg01no101_o08.g1 PHD_FILE: MSMg01no101_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTTTGTTTTTTNNNNNNNNTGNTTNGTGTTTCGCCGTCTTGGGTCTTC
TATATATATTTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
AAAGAGGATCCGCGGAATTCAAGTGTTTCTCACCTTAGACACCTTCTCTC
CAGTTCACTGCAGGCTCTAGCCAGTAGTTTTTAATCCACTTATCATGTCG
CAAATCATAAAATTATGAGGCATACCAAGACATATACGTACAGATTGAGG
AAATTAACATTAGAGCCAGTCATAATAAATAGTTTGAAATCATTAAGGTG
GAAATTTGATGCAAATATAATTAGCAGCCTAAGAGGTCTGGTAGACTAAT
ATCAACCCCATGAAAAAGTGAGTGGTTGTGTGATTTTACAGAGACGACAT
CAGAGGCTGAAACGCTCCAGCTGAATTGATGAGTGCTTCTCATGATGGAA
AATCTGTTAACTATATATCAGATGATTCTGTGATCTCAATAAATTCTGAA
AACTTCTTAGTAAAGAGGGCGTGATGCTAAACATCCAATACATTTTCTAA
TATTCGCACAACTGTCTATCTAAACTTCTTATTTACATATTGCAAAATGC
TGACGTCAGAATTACCACTATTATATTATATTCGATATCTCCCCAACATG
ATTGCCACAGGAAATTATTTTTATCCTACTGCATAACCTGTAAACCCACA
TCCTTCATATACTTGTTTTGTGACAACGGCCCTTTTGATTAAGTAATGTT
TCTTTTATCCCATACGCTCTTATCCTCTCCTAAAGGCTGTCCCTT
CCGCCCCNCCTCNNCCCCCCTCTTTTTCTTTTTTTCTCCTCCCTTTCCCC
CCAACAAATATTTAAACACAATGACACTGGGTAGGCCTGGAGAGACGCCT
GTTCCTAAAAAAGTGAGGAGACACTATAGAATTTTCCCGCAGAAATTCTT
ACAAATGCATATATAAGTATATGTATTATGTATTAATGTTACATATCTAT
ACAATTAGGATGTGTCTTTCTACATCACAATATATATAAAAAAGACAGGA
ACAATAGACAGACTTATATTTACAATCTAAAAATATAACTCTGTAAATAA
ATCAATATAACTCCACGTTCTACTATATGTCCATATCCAATAATGAAAAA
TCTATACCTGTATACATTTAATCAGGTACCTCTGTAGATTCTATCCTAAT
AAATTAATCACTATATGTGCTCATATATGAATACACCGTCCTCTTTGATC
ACTCATCATGTCTGTTTGTACAATTGTTGTTACTATATCAGTTAACACTT
CTTTTTCATTTGCTGGCAGGTCATTTTCTTAACTCGCGTCTTCTGCTTTT
CTTCTTAATTTCATATCCTGGTACGGTTCCCCCACTATATATATGTCAAA
TTAAAATACTTACCCTGGACCTACAACTTTTTTATCTTCCCCTAATATGT
CGTTTTATTCCCGCTCTAAGTATCTCCATCTATCATTTACCATCACCTGC
CCGCCCACCGACTTATAGACTACGTAGACATAATCTCCATCTTTAATTCT
CTTAATTCATCACCTAATCCTTTTCTATTCATATCCCAAACATTTTCTCT
ATCTTACTTTTATTAATCGATATATCTATTCCATAAAGTTGATTACTATT
TTTATCCCTATCGCCTCACTTCTTATTTTTACTTCTTTTCTATATCACTC
ACATGATACTCTTTTTGCTATTGTTTTTCTATGTCAATATATTGTTTTTG
CATCCTTCTTCCACCTCTACCTCCTTCCCAATAGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_o08.b1 MSMg01no101_o08.b1 CHROMAT_FILE:
MSMg01no101_o08.b1 PHD_FILE: MSMg01no101_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:17 2005
         (138 letters)



>mm_chr7_61335862_61336399
          Length = 538

 Score =  223 bits (115), Expect = 5e-63
 Identities = 127/131 (96%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttgaggaaattaacattagagccagtcataataaatagtttgaaatcattaaggtggaaa 67
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 338 ttgaggaaattaacattagagccagacataataaatagtttgaaatcattaaggtggaaa 279

                                                                       
Query: 68  tttgatgcaaatataattagcagcctaagaggtctggtagactaatatcaaccccatgaa 127
           |||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 278 tttgatacaaatataattagcagcctaagaggtctagtagactaacatcaaccccatgaa 219

                      
Query: 128 aaagtgagtgg 138
           |||||||||||
Sbjct: 218 aaagtgagtgg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)