BAC Information

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BAC

Clone NameMSMg01-101P16
Chromosome7 (Build37)
Map Location 109,413,058 - 109,413,302
singlet/doubletsinglet
Overlap genenone
Upstream geneFchsd2, Atg16l2, Stard10, Centd2, Pde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog
Downstream geneStim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1, Olfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101P16.T7 (MSMg01no101_p16.b1)MSMg01-101P16.TJ (MSMg01no101_p16.g1)
ACCAG317248AG317249
length737742
length of high quality
(start - end)		583 (68 - 650)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no101_p16.b1 PHD_FILE: MSMg01no101_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:24 2005CHROMAT_FILE: MSMg01no101_p16.g1 PHD_FILE: MSMg01no101_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCCTATATTCAGAAATGGGCGGAATTCTC
AAGTGAGTACCACAAAGGGCTGAGAAGCACCTTAAAAAATGTTCAACATC
CTAAATCATCAGGGAAATGCAAATCAAAACAACCTTGAGATTCCACCTCA
CTCCAGTCAGAATGGCTAAAATCAAAAATTCAGGTGACAGCAGATGCTGG
CAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAA
GCTTGTACAACCACTCTGGAAATCAGTCTGGCAATTCCTCAGAAAATTGG
ACATAGTACTACAGGAAGATCTTTCAATACCTCTCCTGGGCATATACCCA
GATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCATCAG
AGGAATGGATACAGAAAATGTGGTTTATTTACACAATGGAGTACTATTCC
GCTATTAAAAACAATGAAATTCTTCGGCAAATGGATGCATCTGGAAAATA
TCGTCCTGAGTGAGGTAACCCAATCACAAAAGAACTGACATGATATGCAC
TCACTGATAAGTTGATATTAACCCAGAAACTTAAAATACCCAAGATACAA
TTTTGCAAACACAAGAAAATCTAGACGAATGAAGACCAAAGTGTGGATAC
TTCATTCCTCCTTAGAAAAGGGAACAAAATACCCATG

TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTTCGAAAAAAGGGCCTTTGGAAGCACAGTTAGTGCTCCTAACTG
CTGATCCATGTCTCCACCCCCTGGTTCAACTTCTTAAATGGCATGACTTA
CAATGCCCAACAAAACCTACTTACTGTGTTTGTGGGGGAAGGGGATGGGG
GCATTGGTACCAAACCTAGAGCCTTGTGCTTGCAAGGCAAATACTCATAA
GCTATATTTCTATCCCTTTTCTACTCTAAGTTTTTCTGTGTTGTACAAAT
GCCAATTTTTAAAATATTTTTTTCTTTTCGCCGTGCTCAGAATTGAAGCC
AGGGTCTTGTTTTCGCCACCGCCCCCCCTGTTCCTCTCAGCTGTAACTTA
GCCCTCCCAGTTCTGAGATTATTATTAGATGTGTGCGTGTGTGTGCGTGT
GCGCTTTTGTGTGTGCAACCCACTGGACTCCCCTGGAACTGGCCTTCCGT
TGGTTATCGATGACTATCATGTTGATTCCTCTGGACATACCTCATGAACT
CTTATCTACTGATCCGTATCTCCCTCTCCCCTGACTTGCTATTCTCCGTC
ACTCCCATGACCCCTCTATTACGCAAATTTATCTTCTTCTCCTACCGTTC
AACTGCTATTTATCTCTTCTGTCTGTCCTACTGTCCTCTTGGTAATCACT
TTTCGCCCAATTTTCTTCAAATATTGCCGACCCAAATACGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_p16.g1 MSMg01no101_p16.g1 CHROMAT_FILE:
MSMg01no101_p16.g1 PHD_FILE: MSMg01no101_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:25 2005
         (246 letters)



>mm_chr7_109412858_109413503
          Length = 646

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttggaagcacagttagtgctcctaactgctgatccatgtctccaccccctggttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 cctttggaagcacagttagtgctcctaactgctgatccatgtctccagcccctggttcaa 260

                                                                       
Query: 61  cttcttaaatggcatgacttacaatgcccaacaaaacctacttactgtgtttgtggggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcttaaatggcatgacttacaatgcccaacaaaacctacttactgtgtttgtggggga 320

                                                                       
Query: 121 aggggatgggggcattggtaccaaacctagagccttgtgcttgcaaggcaaatactcata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggggatgggggcattggtaccaaacctagagccttgtgcttgcaaggcaaatactcata 380

                                                                       
Query: 181 agctatatttctatcccttttctactctaagtttttctgtgttgtacaaatgccaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctatatttctatcccttttctactctaagtttttctgtgttgtacaaatgccaatttt 440

                
Query: 241 taaaa 245
           |||||
Sbjct: 441 taaaa 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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