BAC Information

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BAC

Clone NameMSMg01-102A04
Chromosome7 (Build37)
Map Location 87,216,705 - 87,217,000
singlet/doubletsinglet
Overlap geneZfp710
Upstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik
Downstream geneIdh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102A04.T7 (MSMg01no102_a04.b1)MSMg01-102A04.TJ (MSMg01no102_a04.g1)
ACCAG317271AG317272
length696697
length of high quality
(start - end)
430 (70 - 499)296 (70 - 365)
definitionCHROMAT_FILE: MSMg01no102_a04.b1 PHD_FILE: MSMg01no102_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:27 2005CHROMAT_FILE: MSMg01no102_a04.g1 PHD_FILE: MSMg01no102_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAAAGAGCCGCGGATTCA
CTTTGTTTCCCAAGATGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCT
CTCGAGTGCTGGGATTCCAGGCATGTGCCACCACGCCCGGCTAAAAAAAA
TTTTAACTTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGTACAGGCACCC
TCAGAGGCCAGAAGACGGCATCAGAGACGGCATCTCTGAAGATTCAGGCC
ACTCTGAGCCACCTGATGTGGATGCTGGGAACCAAACTTCAGTCTCCTGC
AAGAGCAGTGCACTATCCACTGAACCATCTCTCCAAAGGAGGTTTGCTTT
GTTAGTTGTTTGGCCTTTTCAAGACCAAGCTTCTAGCCCTCTCTGGCCTC
AAACTCTGTAGAGTTGAGCATGACCTTGAACTTCTGATCCTCCTGCCTCT
ACCTCCTCAGCACTTAATGTCCAGGAATATGTTGGCATTCCTGCTTGATG
GAGCACTGAAGATCACACCCAGACCTTCACACCTGCCAGGAGGCGCTCTA
CCACTAAGTCAGATTCCTAGCCCTTTATTTTATGTTTGCTTGAATTGCTT
TGTCCTCCTGTTTTTAATTGCTGTCCGGGTTATGTTGTGTTGTGCTTATA
AGCCATCTACCTTTCATTGCTGCCTTTATCTTTACCACCTCATACA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCTTTGGTTTCAGCAGTGGAAAGAAGAAAG
CACACAGTTGGGGGTGGCCCTTGCTGGAAGAGGCCCCCTAGAGTAGCCTG
AAGTACCCTGGAGACAGAGCAAGGCCCAGAATCCCCCATGATGCTGCCCA
AGGTAGGAATTCACTGTTCTCAGGGAAGCCCTAGCCCAATCATCCAACAG
CCCTGAGGCCCTGTCCCCAGCGCACTCTGACTTAAGAACTGGCTCCTCAA
TGGTCTCAGCGCTCTTCTTTACAAACAGGTGACAAAGAGGTGGAAATCAC
CAATTCTTCAAGATCCACCTGTTTCAGGGATGTGCCCTAGTAGTGGAGCG
CTGGCCTGGCATGCAAGATGCCCTGGGTTCTTTTCCTGGGAGGAAGGCAG
GGTCAAGGCCTTCTTCCCAGGGTCCTTCCAGCTTCCACAGACCGAGCTGG
GGTTTTCCTTACAGATAGACAAACTGAGGGCCCCCATGCTTGGCCCTATT
AACCAGACCCCGTTCCCTGCACTCTAGGATACAGCAGCCCCAGCCTAATC
TCCTCCACGACACTGCAATGTTGTGTTTAATCCACAGTGATCAGAAGCAA
CGCCAGAAACCGATTTTTCACTAGAACACCACGCACGCCGACTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_a04.g1 MSMg01no102_a04.g1 CHROMAT_FILE:
MSMg01no102_a04.g1 PHD_FILE: MSMg01no102_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:27 2005
         (296 letters)



>mm_chr7_87216505_87217200
          Length = 696

 Score =  526 bits (272), Expect = e-154
 Identities = 290/296 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctttggtttcagcagtggaaagaagaaagcacacagttgggggtggcccttgctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 496 tcctttggtttcagcagtggaaagaagaaagcacacagttgggggtggggcttgctggaa 437

                                                                       
Query: 61  gaggccccctagagtagcctgaagtaccctggagacagagcaaggcccagaatcccccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gaggccccctagagtagcctgaagtaccctggagacagagcaaggcccagaatcccccat 377

                                                                       
Query: 121 gatgctgcccaaggtaggaattcactgttctcagggaagccctagcccaatcatccaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatgctgcccaaggtaggaattcactgttctcagggaagccctagcccaatcatccaaca 317

                                                                       
Query: 181 gccctgaggccctgtccccagcgcactctgacttaagaactggctcctcaatggtctcag 240
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 316 gccctgagggcctgtccccagcgcactctgacttaagaactgggtcctcaatggtctcag 257

                                                                   
Query: 241 cgctcttctttacaaacaggtgacaaagaggtggaaatcaccaattcttcaagatc 296
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cgctcttccctacaaacaggtgacaaagaggtggaaatcaccaattcttcaagatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)