BAC Information

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BAC

Clone NameMSMg01-102I24
Chromosome7 (Build37)
Map Location 94,711,551 - 94,711,850
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4, Tyr
Downstream geneGrm5, Ctsc, LOC100039756, Rab38, LOC100039924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102I24.T7 (MSMg01no102_i24.b1)MSMg01-102I24.TJ (MSMg01no102_i24.g1)
ACCAG317670AG317671
length700700
length of high quality
(start - end)
463 (67 - 529)301 (70 - 370)
definitionCHROMAT_FILE: MSMg01no102_i24.b1 PHD_FILE: MSMg01no102_i24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:11 2005CHROMAT_FILE: MSMg01no102_i24.g1 PHD_FILE: MSMg01no102_i24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCGGCGGAATTC
TAACTGATTACCTGAAGTGGAGGAGGAGCACCTGAAAAAATGTTCAACAT
CCTTAGTCATCACAGAAACACAAATAAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGACTAAGATAAAAAATGCAGGTGACATCAGATGTTG
GTGCGAATGTGGAGAAAGAGGAACACTCCTCCAATGCTGGTGGGATTGCA
AGTTGGTACAACCTCTCTGGAAATCAGTCTGGCTGTTCCTCAGAAAATTG
GACATAGTACTACTGGAAGATTCAGGTGCACCACTCCTGGGCATATACCC
AAAAGATTCCCCAACATATAACAAGGACACATGCTCCACTATGTTCATAG
CATCCTTATTTATCATAGCCAGAAGGTGGAAAGAACCCAGATGTCCCTCA
ACAGAGGAATGGATACAGAAAATGTAGTACATTTACACAATGGAGTACTA
CTCAGCTATTAAAACACAATAACTTCATGGAATTCTTAAGTAAATGGATG
GAACTAGAAAATATTATACCGAATGAGGTAACCCAATTGCAAAAGAATAC
ACATGGTATAAATTCACTGATAAGCTGATATTAACCCAAAATTTCGTGAA
AACCCAATATACAATTCACAGACCACCTGAAACTCTAGACAACAGAACAA

TGAAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCCCAGATGGGGCTCACCTCATTTTTCTAT
TTTTGATGTTCTTTAATCCCACGTACTTTCCTCTCAAACAATTAGAGTAC
AACACAGAAACCTGTTTCGTGAAATGAACATTTCTGACTGTCTTTACATA
CCCAAGCCTTAATGCTCTTCACATATGAATTTTCTTCAGACTTTGAAAAT
TTAAGTGCAAAAGTTGAACTAGTTAAAAACATGAATTGCAGTAATTTCTC
ATGAGAATTAAACATCTCTAATAATCTCACAGGAAGGACCACTTTAGCAT
TTCTTTCGTAACACATTAGCTTCTTTGGCATGTTGAAGATAGCCTGAAAA
CTTCAAGACTAATTCATAAGAATACCTCTCTTTGGGTATATTCAAGTGGC
AAAAATGAGACATCCTAAATGGTGCCTATATAATTATACTCCTTGGGAAT
TGTGTTAACCATGTAACAATACTGAAAAATTAATGAATAGCTCACAGACA
AGAAAAGGGTTTGCTGATGCTGCTGTTGTTGCGTGTTTATTTTGCTTTTG
CTATAAATCCCATCTTTTCAGGCTATTTAATTTTTTCCAATCAACCTTTT
CCAGCTTGAACTACAATAATTTAAATGTCACAAGCCTTTGCCAACATGGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_i24.g1 MSMg01no102_i24.g1 CHROMAT_FILE:
MSMg01no102_i24.g1 PHD_FILE: MSMg01no102_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:11 2005
         (301 letters)



>mm_chr7_94711351_94712050
          Length = 700

 Score =  476 bits (246), Expect = e-139
 Identities = 288/302 (95%), Gaps = 3/302 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcccagatggggctcacctcatttttctatttttgatgttctttaatcccacgtacttt 60
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ctcccagatggggctcaccccatttttctatttttgatgttctttaatccca-gtacttt 259

                                                                       
Query: 61  cctctcaaacaattagagtacaacacagaaacctgtttcgtgaaatgaacatttctgact 120
           ||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 260 cctatcaaacaatcagagtacaacacagaaacctgtttcatgaaatgaacatttctgagt 319

                                                                       
Query: 121 gtctttacatacccaagccttaatgctcttcacatatgaattttcttcagactttgaaaa 180
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 320 gtctttatatacccaagccttaatgctcttcacatatgaattttcttcagactttgaaga 379

                                                                       
Query: 181 tttaagtgcaaaagttgaactagttaaaaacatgaattgcagtaatttctcatgagaatt 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 380 tttaagtgcaaaagttgaactagttaaaaacatgaattacagtaatttctcatgagaatt 439

                                                                       
Query: 241 -aaacatctctaataatctcacaggaaggaccactttagcatttctttcgtaacacatta 299
            ||| |||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 taaa-atctctaaaaagctcacaggaaggaccactttagcatttctttggtaacacatta 498

             
Query: 300 gc 301
           ||
Sbjct: 499 gc 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 700
Length adjustment: 9
Effective length of query: 292
Effective length of database: 691
Effective search space:   201772
Effective search space used:   201772
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)