Query= MSMg01no102_o22.b1 MSMg01no102_o22.b1 CHROMAT_FILE:
MSMg01no102_o22.b1 PHD_FILE: MSMg01no102_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:40 2005
(606 letters)
>mm_chr7_106193727_106194732
Length = 1006
Score = 893 bits (462), Expect = 0.0
Identities = 474/478 (99%)
Strand = Plus / Minus
Query: 5 ggaattcaggacattcctcccacggggcctcttccttttcttctgtcttaatactagtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaattcaggacattcctcccacggggcctcttccttttcttctgtcttaatactagtca 419
Query: 65 catctttacataatgaagcttagaaataactttatatttgatagtattgctatcaactat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 catctttacataatgaagcttagaaataactttatatttgatagtattgctatcaactat 359
Query: 125 tgtctgtctgtgcacggactgagaatggagccacgggggactcccttcatcgtatcactg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 358 tgtctgtctgtgcacggactgagaatggagccacgggggactcccttcatcgtatgactg 299
Query: 185 tcaatgctgatggcctgaccccaagcagcctccacaatgccacagcccagtgactgggac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcaatgctgatggcctgaccccaagcagcctccacaatgccacagcccagtgactgggac 239
Query: 245 aacggagagactgtttaaaagatttaaaaatgtaattatgaatttgtgtgtgcgtgtgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 238 aacggagagactgtttaaaagatttaaaaatgtaattatgaatttgtgtgtgcatgtgtg 179
Query: 305 ttaggtatttacactacatccgtgtaggtacccacagaggccagagacattgggccctct 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 178 ttaggtatttacactacatccgtgtaggtacccacacaggccagagacattgggccctct 119
Query: 365 gtgctggagtcacaggtgcttgtacgctgcccagcgttggagctgggaagcaatctccag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gtgctggagtcacaggtgcttgtacgctgcccagcgttggagctgggaagcaatctccag 59
Query: 425 ttcagcaagaatagtacgtcctcttaaacactgagccatctcccgaacgcctgaatag 482
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 ttcagcaagaacagtacgtcctcttaaacactgagccatctcccgaacgcctgaatag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_o22.g1 MSMg01no102_o22.g1 CHROMAT_FILE:
MSMg01no102_o22.g1 PHD_FILE: MSMg01no102_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:40 2005
(549 letters)
>mm_chr7_106125704_106126652
Length = 949
Score = 953 bits (493), Expect = 0.0
Identities = 539/561 (96%), Gaps = 13/561 (2%)
Strand = Plus / Plus
Query: 1 atagagacagaaacagattgatggttgccagggactgaggaggggcaggctgagggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 190 atagagacagaaacagattgatggttgccagggactgaggaggggcagggtgagggagaa 249
Query: 61 gccatttaatgggcgcagcgcaggctttgctttgggcatgctagctgcacaaaattgaat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gccgtttaatgggcgcagcgcaggctttgctttgggcatgctagctgcacaaaattgaat 309
Query: 121 agacactttaaatcttgaattttgtgctaaatttaaaattgattttttaaaaa-aaatcc 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 310 agacactttaaatcttgaattttgtgctaaatttaaaattgattttt-aaaaagaaatcc 368
Query: 180 aagagaaaaccacctcatgttccctttgtcaaatatattatag-----------cttctt 228
||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 369 aagagaaaaccacctcatgttccctttgtcaaatatattataggtctccttcagcttctt 428
Query: 229 atggctttaaactgagacgcatacttgggctcaaatcaatcaccacactggaaaagggac 288
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 429 atggctttaaactgagacgcatacttgagctcaaatcaatcaccacactggaaaagggac 488
Query: 289 tcatctaacttactcacatgctccttagctgaaagcctttcttcctccagacatggaaca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 489 tcatctaacttactcacatgctccttagctgaaagcctttcttcctccagacacggaaca 548
Query: 349 tcccgtaatacctgaggaaggctgatccccacctgctttcatggatgccagaacccatga 408
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 549 tcccgtaatacctgaggaaggctgatccccacccgctttcatggatgccagaacccatga 608
Query: 409 ttctcaaatcccttacaacgtcacggtgtgtgcacatagcctacacgcattcatggtatg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ttctcaaatcccttacaacgtcacggtgtgtgcacatagcctacacgcattcatggtatg 668
Query: 469 ttttaagttgcttctaagtcctactatctgatgactgccacaagacccagcaactgcacg 528
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 669 ttttaagttgcttctaagtcctactatctgatgactgccacaagactcagcaaccgcacg 728
Query: 529 gttagggatatacaccaaaga 549
| |||||||| ||||||||||
Sbjct: 729 ggtagggatacacaccaaaga 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
