BAC Information

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BAC

Clone NameMSMg01-103G14
Chromosome7 (Build37)
Map Location 31,721,427 - 31,721,952
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1
Downstream geneHamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103G14.T7 (MSMg01no103_g14.b1)MSMg01-103G14.TJ (MSMg01no103_g14.g1)
ACCAG318285AG318286
length701715
length of high quality
(start - end)		44 (42 - 85)527 (77 - 603)
definitionCHROMAT_FILE: MSMg01no103_g14.b1 PHD_FILE: MSMg01no103_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:20 2005CHROMAT_FILE: MSMg01no103_g14.g1 PHD_FILE: MSMg01no103_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:20 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATAATTTGCGGCGCTATACGACTCCTATTCCAAACGGATCCGCGGAATT
CTGAGTTTTCATCCCTTCCCTGGAGATGCTGAGGCTGCAGGGCTGGGCCC
TGGTGGCAGCACGTGTCACTGGGCATGGAGCAAGATAAGACTGGGAGAAA
ATAAGGTGTGTTGGGGGGGGGATGCACGATTTTTATCTCATCCTTTTCTC
CCACTAACTTCCTCATTCCCCTGTTTCCCTCCATGCCCCCCTACCTTTCT
TTCTCTCTTCTTCCACCTTCTCAAACCCTCTTCTCCACTTCCCTTCTTTT
ACTCCCCTTCTTTTTCTTTTTCCCCCCGTCCCCCTTCCGTTCCTCCCCCT
CTTCTTTTCCCCCTCTCCCCCCCCCCCCCTTTCTTTTACTTTTCCCCCTT
CTTCCCTCCCCCCTCCCATCATACCATCTTCTTTTTCTCTCTCCCCTTTT
TCGTCTTCTCCCTTCCTTCTCCCTCCTTCTCTTCTTTCCTTTCCCCCTCT
TCCCCTTCCCCCCTTTTCCCCCCTCCCTTTTTCTTCCTCTCCCTTTCCAC
CCTTCCTCCCCCTTCCCTTTTTTTTTTTTCCCCCCCCCTTTTTTTCTTTA
TTTTTCCCTCCCCCCCTCTCCTTCCTTTTCTTCCCCCTCCCTTTTTTCTT
CTTCTCCTATTCCCCCCCCCCTCCCCCCTCTTCCCCTTTCCTCTTCCTCC
G

NCTCGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCATGGACAAGTTGTTGTCAGGA
CATTGGAAAGATGGCACAGGAAGAATCATTGCTGTGAAAAGTATGGGGCA
GAGGGGAAAAATGAAGTCTCTGAGGCCAAATTGGGAGGCACCTGACAGAG
TGACCAAGCAGAGGTAGTAGGCTCCACCTGTTCCCAGACCCTGAAGTCCC
TGAAGGGAATGGGCAAGGTGCGTGGTCAGTTCTGAAGAGAGAGATGACTG
CCCTCACCCACCCCTCTCACTTATTGTTGGGCCAATTTTCCACTTTTCCC
GACCTCATGAGGAAATGCCACTTGCTGTTTCCCACAGCCCATCAGGCGCA
GGGCCCAGCTCCCCTCACACGTAGCCAGTCACTGCAGCCCTCCTGACAAG
AGGATGGAGGGCTATGAGATTTGGGGTGCCAGGGTCTTGTATATCCCAGC
AGTAGGAGGACTATGCCTTGGAGGTGATGAAGAGCTGGGAAGCTTTGCTA
CAGCAAGCTGGGGAACTGGCTCCAGTCAGGAGGCTCCTGGCAGGTCTCCT
GAGTATACAACAGGCCAGAGGAAAGCACAGCTGTCTGCCAGACAGTTGTT
ACTCACTATAGCTTAACGTTTGACGTTCGGCCTCTAACGCATGGCGCTCC
CCTTCCTGTTCAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_g14.g1 MSMg01no103_g14.g1 CHROMAT_FILE:
MSMg01no103_g14.g1 PHD_FILE: MSMg01no103_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:20 2005
         (527 letters)



>mm_chr7_31721219_31722144
          Length = 926

 Score =  820 bits (424), Expect = 0.0
 Identities = 502/528 (95%), Gaps = 3/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcatgga-caagttgttgtcaggacattggaaagatggcacaggaagaatcattgctgt 59
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agcat-gaccaagttgttgtcaggacattggaaagatggcacaggaagaatcattgctgt 676

                                                                       
Query: 60  gaaaagtatggggcagaggggaaaaatgaagtctctgaggccaaattgggaggcacctga 119
           |||||| || ||||||||| |||  |||||||| || |||||||||||||||||||||||
Sbjct: 675 gaaaaggatagggcagaggagaactatgaagtcactaaggccaaattgggaggcacctga 616

                                                                       
Query: 120 cagagtgaccaagcagaggtagtaggctccacctgttcccagaccctgaagtccctgaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cagagtgaccaagcagaggtagtaggctccacctgttcccagaccctgaagtccctgaag 556

                                                                       
Query: 180 ggaatgggcaaggtgcgtggtcagttctgaagagagagatgactgccctcacccacccct 239
           |||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 555 ggaacgggcaaggtgtgtggtcagttctgaagagagaggtgactgccctcacccacccct 496

                                                                       
Query: 240 ctcacttattgttgggccaattttccacttttcccgacctcatgaggaaatgccacttgc 299
           ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctcacttaaggctgggccaattttccacttttcccgacctcatgaggaaatgccacttgc 436

                                                                       
Query: 300 tgtttcccacagcccatcaggcgcagggcccagctcccctcacacgtagccagtcactgc 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 435 tgtttcccacagcccatcaggcgcagggcccagctcccctcagacgtagccagccactgc 376

                                                                       
Query: 360 agccctcctgacaagaggatggagggctatgagatttggggtgccagggtcttgtatatc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agccctcctgacaagaggatggagggctatgagatttggggtgccagggtcttgtatatc 316

                                                                       
Query: 420 ccagcagtaggaggactatgccttggaggtgatgaagagctgggaagctttgctacagca 479
           ||||||||||||||||| ||||| || ||||||| || |||||||||| |||||| ||| 
Sbjct: 315 ccagcagtaggaggactgtgcctggg-ggtgatgcagggctgggaagccttgctagagcg 257

                                                           
Query: 480 agctggggaactggctccagtcaggaggctcctggcaggtctcctgag 527
           ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agctgtggaactggctccagtcaggaggctcctggcaggtctcctgag 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space:   473572
Effective search space used:   473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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