Query= MSMg01no103_k22.b1 MSMg01no103_k22.b1 CHROMAT_FILE:
MSMg01no103_k22.b1 PHD_FILE: MSMg01no103_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:41 2005
(484 letters)
>mm_chr7_76052875_76053758
Length = 884
Score = 847 bits (438), Expect = 0.0
Identities = 475/496 (95%), Gaps = 18/496 (3%)
Strand = Plus / Plus
Query: 1 gatcagggagga-tggctctgatgtgtggctccccagattctgactgtcacagcttagct 59
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gatcaggga-gattggctctgatgtgtggctccccagattctgactgtcacagcttagct 253
Query: 60 cagacctctcttcatctctccacattttggaatctctctctatatatataatgaagcata 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cagacctctcttcatctctccacattttggaatctctctctatatatataatgaagcata 313
Query: 120 gattcatttacctagcgttctgtcatccagaaaactctattaacttttgcatctgttctc 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gattcatttacctagcattctgtcatccagaaaactctattaacttttgcatctgttctc 373
Query: 180 tgctactattgggataacggatgctcattgttgtgacactgaagccattcaggtgccttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgctactattgggataacggatgctcattgttgtgacactgaagccattcaggtgccttt 433
Query: 240 ggcatcacttttta-----tcacatggcattttgtatgggtggagtaaagggttctctag 294
|||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggcatcac-----acaggatcacatggcattttgtatgggtggagtaaagggttctctag 488
Query: 295 ggacctgacacaaagcagccatttgagaggcccagcagtgtctagcccaggacaagctga 354
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggacctgagacaaagcagccatttgagaggcccagcagtgtctagcccaggacaagctga 548
Query: 355 agtgtgaggaaaaaaaaaaa------gaggcattcccttgttcagctgcagagtgctttc 408
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 549 agtgtgagaaaaaaaaaaaaaaaaaagaggcattcccttgttcagctgcagagtgctttc 608
Query: 409 tcacttgtatttacccatcatttgtgcctgtatgcagcacatatgttcagagtgtgtaca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tcacttgtatttacccatcatttgtgcctgtatgcagcacatatgttcagagtgtgtaca 668
Query: 469 tctgccagggaccaca 484
||||||||||||||||
Sbjct: 669 tctgccagggaccaca 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_k22.g1 MSMg01no103_k22.g1 CHROMAT_FILE:
MSMg01no103_k22.g1 PHD_FILE: MSMg01no103_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:41 2005
(239 letters)
>mm_chr7_76162328_76162966
Length = 639
Score = 437 bits (226), Expect = e-127
Identities = 235/238 (98%)
Strand = Plus / Minus
Query: 1 cactcagggtttcctccacactacatattccttttattatttatcttatttttacctgtt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 416 cactcagggtttcctccacactacatattccttttattatttatcttattttcacctgtt 357
Query: 61 gttttgccataaaacataattaggagaaaggaggcgtcttctgatatgacagcgatttga 120
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 356 gttttgccataaaacataattaagagaaaggaggcgtcttcttatatgacagcgatttga 297
Query: 121 tgaattatccaggaaggcgctagctagataaagtaacttgatctgcttgctgtttacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tgaattatccaggaaggcgctagctagataaagtaacttgatctgcttgctgtttacagt 237
Query: 181 gcttaaaacaggcaatcattaagcaactgtgagggttgtgtgtgtgtgtgtgtgtgtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gcttaaaacaggcaatcattaagcaactgtgagggttgtgtgtgtgtgtgtgtgtgtg 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
