BAC Information

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BAC

Clone NameMSMg01-104C22
Chromosome7 (Build37)
Map Location 91,333,457 - 91,458,187
singlet/doubletdoublet
Overlap geneArnt2
Upstream geneEG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik
Downstream geneLOC100039239, Fah, Zfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104C22.T7 (MSMg01no104_c22.b1)MSMg01-104C22.TJ (MSMg01no104_c22.g1)
ACCAG318858AG318859
length714718
length of high quality
(start - end)		533 (45 - 577)193 (129 - 321)
definitionCHROMAT_FILE: MSMg01no104_c22.b1 PHD_FILE: MSMg01no104_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:21 2005CHROMAT_FILE: MSMg01no104_c22.g1 PHD_FILE: MSMg01no104_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,333,457 - 91,333,988)(91,457,995 - 91,458,187)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGAAT
TCTCAAAAGAGTTCCAGGCGTGCCACTGAGACTCACAAGAGGGGAGAAGA
GAGCTAGCTTTAGAAACCTGAGAGTTCTCTGGGTGTTTCAACTTAAACTA
AGTTGCAAGGACTTCAGGAGAAAAGAGCTCAACGGTCAGGATCAAGAAGA
CCTTTCAGAGACCTCCTCAAGAGAAAGCTTCCTTTCCCTGGTTCCATGCT
GAACCCTCAGTTGATGATGGAACTAGAAGTTGGGGAGTCCCTAGTAATCA
GAAAGACCATTATCCTTTTATAGCTTTCTGATTTATTTTTTAAAAATATC
TCCACATTGCTTTATATGCAGGAGATATATTCTTTGTGTTTAAAACAGCG
TCTGCTGTGAAAGAGAACATGAATGTGAAAAGATAATTACTGCATGGTAT
TAGAAGTGCCATCCTGAAAGGATGTCTCCGACAGCACATAAGAGGGAGTG
ACGACTGCTGCCGAAGTGGGAGAAGGTTTTCTATGAAGGAGGTGGGTCTT
AAGATCAATCTTATACAATTAGGCCAATGTGTTCACATGGGAGAAATAGC
ATTTGCTAAAGTACACCCTGTGCATGTGTGCAAATGGTAGGACCCATTTT
AAATCAGCATCTTGTATGATCTTAGAGCTTGCAGTCTTATTGCTTTTAGC
CCTGCGAGACCCGT

GATGAAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAAAGATTGGGTCCAGGTCTCCTCA
TCACCAGCAAATCTGATAGAGAAACGGGGCAGAGAGACAAGGAGGGAGGG
AAAGAGATTGTTTTGGTTCTTTTCAAAGAAAAACAAAGGTCATTGCAGCT
TTTTGTACCATTGAGGTGATGGTAGGAATTGAGATATATAATCTACTTGA
AGATATATATTATGGCATGCAGCCAGTCAGAGAGGTTAGATATAGGACTT
CACTATGTCCTGTTCCCTTGGAGAAGTAGGTATCATCTCATTGCTAGGGC
AGGAAAGATAGCTGGGAGTGTCTTTAGAGTGAAGAGTATTGTTCATTCTT
CTAGACTGAGGTGCCAAACCCATAACTACATAGAAAGATAAGTAGCCATT
TGGCTGTGTAACTCTGAAACCCAGATGAGAGGCTAGTACCGATCATGTAT
TCAAGGATGGACACTGTGTCGCCAGCTGATTTTGATCCTATAATTTTTTT
AACTGACCGGACTTCAGAGGACTTTACTTGTCCCCCTACTTCCCCCTTAT
TTAACACTTGATGTGAGCCTCCCGCCCAGTGCCACATATTCACACCCGAT
TTATGTAAAATCTGTTATCGTTTTGCCTAATCCCTCGATGACCCATCTGA
GTCCCCTCTGATGCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_c22.b1 MSMg01no104_c22.b1 CHROMAT_FILE:
MSMg01no104_c22.b1 PHD_FILE: MSMg01no104_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:21 2005
         (533 letters)



>mm_chr7_91333256_91334188
          Length = 933

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctcaaaagagttccaggcgtgccactgagactcacaagaggggagaagagagct 61
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctcaaaagaattctaggcgtgccactgagactcacaagaggggagaagagagct 261

                                                                       
Query: 62  agctttagaaacctgagagttctctgggtgtttcaacttaaactaagttgcaaggacttc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agctttagaaacctgagagttctctgggtgtttcaacttaaactaagttgcaaggacttc 321

                                                                       
Query: 122 aggagaaaagagctcaacggtcaggatcaagaagacctttcagagacctcctcaagagaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggagaaaagagctcaacggtcaggatcaagaagacctttcagagacctcctcaagagaa 381

                                                                       
Query: 182 agcttcctttccctggttccatgctgaaccctcagttgatgatggaactagaagttgggg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agcttcctttccctggttccatgctgaaccctcagttgatgatggaactagaagttgggg 441

                                                                       
Query: 242 agtccctagtaatcagaaagaccattatccttttatagctttctgatttattttttaaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agtccctagtaatcagaaagaccattatccttttatagctttctgatttattttttaaaa 501

                                                                       
Query: 302 atatctccacattgctttatatgcaggagatatattctttgtgtttaaaacagcgtctgc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atatctccacattgctttatatgcaggagatatattctttgtgtttaaaacagcgtctgc 561

                                                                       
Query: 362 tgtgaaagagaacatgaatgtgaaaagataattactgcatggtattagaagtgccatcct 421
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgaaagagaatatgaatgtgaaaagataattactgcatggtattagaagtgccatcct 621

                                                                       
Query: 422 gaaaggatgtctccgacagcacataagagggagtgacgactgctgccgaagtgggagaag 481
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 622 gaaaggatgtctccgacagcacaaaagagggagtgacgactgctgccgaagtgggagaag 681

                                                               
Query: 482 gttttctatgaaggaggtgggtcttaagatcaatcttatacaattaggccaa 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gttttctatgaaggaggtgggtcttaagatcaatcttatacaattaggccaa 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no104_c22.g1 MSMg01no104_c22.g1 CHROMAT_FILE:
MSMg01no104_c22.g1 PHD_FILE: MSMg01no104_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:21 2005
         (193 letters)



>mm_chr7_91457795_91458387
          Length = 593

 Score =  373 bits (193), Expect = e-108
 Identities = 193/193 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagagagacaaggagggagggaaagagattgttttggttcttttcaaagaaaaacaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gcagagagacaaggagggagggaaagagattgttttggttcttttcaaagaaaaacaaag 334

                                                                       
Query: 61  gtcattgcagctttttgtaccattgaggtgatggtaggaattgagatatataatctactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtcattgcagctttttgtaccattgaggtgatggtaggaattgagatatataatctactt 274

                                                                       
Query: 121 gaagatatatattatggcatgcagccagtcagagaggttagatataggacttcactatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaagatatatattatggcatgcagccagtcagagaggttagatataggacttcactatgt 214

                        
Query: 181 cctgttcccttgg 193
           |||||||||||||
Sbjct: 213 cctgttcccttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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