BAC Information

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BAC

Clone NameMSMg01-104O05
Chromosome7 (Build37)
Map Location 86,739,139 - 86,739,761
singlet/doubletsinglet
Overlap geneRhcg
Upstream geneMrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream gene5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104O05.T7 (MSMg01no104_o05.b1)MSMg01-104O05.TJ (MSMg01no104_o05.g1)
ACCAG319386AG319387
length726698
length of high quality
(start - end)		61 (121 - 181)623 (71 - 693)
definitionCHROMAT_FILE: MSMg01no104_o05.b1 PHD_FILE: MSMg01no104_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:18 2005CHROMAT_FILE: MSMg01no104_o05.g1 PHD_FILE: MSMg01no104_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGGCGC
GGAATTCACTCTGGTCTCCACATGCTAGGTGCTGACGATTGAATCTCAGT
TCTTTGTAAGAGCACTCAGCATTCTTAATTACTAATTCATCTTTCTAGGC
CCTGTCTTCTTGGATTTAACTCTTATTTTAGGAAATGGGAGCAACTGACC
GTATCTGATTTTAGGATAAATATACTGTATCTTTTAGTATAAATGTAAAA
ACTTACATATTATTCAATCTAATCACAAATAATAGAATGAACACGTAAAC
ATACTATATTGTTCTACCCACTCACTTGTTATTCTGTGTGTGACCGAATG
AGTTATCTACATCCGTATGTTTTTTTTCCCTCTGCCCCAGTCCAGTCAGT
TCTGTTTATCATCCGATCATTGTTACCTACTTACACACCTCATTATCGCC
TGCCAACGTTTCTATATCTAATTGCATGCTTCCTCTTCCTACAATCTTTC
AAGTCTTTCCGATTTATATCTCCACTTATCCTCACTCCTTTACTTGTACT
CTTGCCTGTCCTTACGCGTAATTCTTATGCTCCCATTCAAGACCTTCTAC
TCGATATTCCCTAATACTCTTTACTTTACAATTTTACCTTTGTTTATTCG
ACATAACGCCTTGACTTTCAGTATCTTCATCCTTAAGTTTATTTTCTAAC
ATAACCTAGACTGCTCAAACTGTTAA

NCGATGAAGTGGGAGGCTGGCGGCGCCTGTTCCCAAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACCTAGCCTGGGATATACGAGGTCCCGT
CTTTCAAGGGGACAGGGATGATTGGTGGTGATGGCACCCATCTGTAATCC
CAGCACTTGGCTGAGGCAGGGGGATACTTAATTCCAGGCTAGCCTGGGGT
ATGAACAAGAGGTAAACAACTACCTTGCTTCCTGGAAGTTTCTCAAGGTT
TGGATATAGATATTACAGCACCCCATCAATTATTTTGTGCATTACAGAGG
GGAAGGAGGAGGGAAGGTCTAGCCTGATCTAACCAAATAAAGCCAGGTCA
TAGATGGGGAAACTGAAGCTGACCTCTAGGCTGAAGAGACTCTCCAAGTC
AAGCAGCGGCAGTTACAAAGCCAAGTGTGTTCTTGAGTCTCTTTCTATAT
GTTCCTGCAGTCTAGCCTGCCTAGTCCATCTCAACTCACACCTTCATTTC
TTCATGCCTGCTGTTTGTCTCTTTCCTATGGCATCTGGCTTTGAGACCTG
GGCCTCTGTTGAGAAAAGCAGATCCCCATCCCCCACAGATGAGACTTACC
TGCTTCTCACCTGCCCTGGGAGTTTAGTGTACCAAGGCTGCTGAAGGTGC
TGAAGTTGCTAAGGATACTGGAGGTGTCGGAGGGACTGGAGGAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_o05.g1 MSMg01no104_o05.g1 CHROMAT_FILE:
MSMg01no104_o05.g1 PHD_FILE: MSMg01no104_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:18 2005
         (623 letters)



>mm_chr7_86738939_86739961
          Length = 1023

 Score = 1205 bits (623), Expect = 0.0
 Identities = 623/623 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacctagcctgggatatacgaggtcccgtctttcaaggggacagggatgattggtggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacctagcctgggatatacgaggtcccgtctttcaaggggacagggatgattggtggtg 260

                                                                       
Query: 61  atggcacccatctgtaatcccagcacttggctgaggcagggggatacttaattccaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcacccatctgtaatcccagcacttggctgaggcagggggatacttaattccaggct 320

                                                                       
Query: 121 agcctggggtatgaacaagaggtaaacaactaccttgcttcctggaagtttctcaaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctggggtatgaacaagaggtaaacaactaccttgcttcctggaagtttctcaaggtt 380

                                                                       
Query: 181 tggatatagatattacagcaccccatcaattattttgtgcattacagaggggaaggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggatatagatattacagcaccccatcaattattttgtgcattacagaggggaaggagga 440

                                                                       
Query: 241 gggaaggtctagcctgatctaaccaaataaagccaggtcatagatggggaaactgaagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaaggtctagcctgatctaaccaaataaagccaggtcatagatggggaaactgaagct 500

                                                                       
Query: 301 gacctctaggctgaagagactctccaagtcaagcagcggcagttacaaagccaagtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacctctaggctgaagagactctccaagtcaagcagcggcagttacaaagccaagtgtgt 560

                                                                       
Query: 361 tcttgagtctctttctatatgttcctgcagtctagcctgcctagtccatctcaactcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttgagtctctttctatatgttcctgcagtctagcctgcctagtccatctcaactcaca 620

                                                                       
Query: 421 ccttcatttcttcatgcctgctgtttgtctctttcctatggcatctggctttgagacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttcatttcttcatgcctgctgtttgtctctttcctatggcatctggctttgagacctg 680

                                                                       
Query: 481 ggcctctgttgagaaaagcagatccccatcccccacagatgagacttacctgcttctcac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcctctgttgagaaaagcagatccccatcccccacagatgagacttacctgcttctcac 740

                                                                       
Query: 541 ctgccctgggagtttagtgtaccaaggctgctgaaggtgctgaagttgctaaggatactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgccctgggagtttagtgtaccaaggctgctgaaggtgctgaagttgctaaggatactg 800

                                  
Query: 601 gaggtgtcggagggactggagga 623
           |||||||||||||||||||||||
Sbjct: 801 gaggtgtcggagggactggagga 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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