BAC Information

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BAC

Clone NameMSMg01-105A23
Chromosome7 (Build37)
Map Location 99,068,954 - 99,069,332
singlet/doubletsinglet
Overlap geneDlg2
Upstream genenone
Downstream geneCcdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105A23.T7 (MSMg01no105_a23.b1)MSMg01-105A23.TJ (MSMg01no105_a23.g1)
ACCAG319514AG319515
length684680
length of high quality
(start - end)
418 (45 - 462)379 (72 - 450)
definitionCHROMAT_FILE: MSMg01no105_a23.b1 PHD_FILE: MSMg01no105_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:33 2005CHROMAT_FILE: MSMg01no105_a23.g1 PHD_FILE: MSMg01no105_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTTATAGTGTCAAAAAATTTTTTTTTCTGTCTTTTTCTAAGAATAGA
GAGATTAGGGTCATGGGATATAGATTCAAGGGATAGTCAAAAGGAAACCT
GGAGTAAATGACTGAATTGACATGTAAATGAAAGAATGGGTTTTGGTCTG
CAAGAGAACCCAGAGAGAACTGCTTGGAGAATGAACACAACTCTTAGAAT
TTCTTTACAGCTCTTTTAGAACTTTTGTAACAGGATTTCTGACTTGGTCC
GAAGATCCAAGGAATTGTTTTTCTGGTGGCTTTTTTGACTTTAGTTGGAA
AGCCCATGTGCTATCCAGAGAACTTTTAGAATTTTTCTCTAGCCCTAGAG
AGCTGTCTCTGGCAAAGAGCTGTCTCAAACAGAGATCTATCTGGAAAGCT
ATCCCAAACAGAACAGAGGCTGCCAGCTTGTAGCCATGATTTCACTTTGA
GTTGTTCTTTTGCCACTCTCAAACACCCTTCCTCAGGACTTCCTTTCCAA
GCTGAGGCTGGTTCTTGCCAACCGTGCCCTCAGTAAACCACATATTATCA
AATAACATTGTAACTATACCCAAAATTATTTTTCCCTTCTGCCCGCTGTA
TCTATACTTATATAAGCCTTTCCCCCGTTGGCAT
ACATTAATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCCAAATTCTTATATATAGTTGTTTGTACATATATA
AACATGCATATAGCGATATACATCCATCTGGATTTATATGAACATACATC
CATATCTATACCTATATATATAATCCTTAACAAAACCCATACATTCCTAT
TTGCATAAATGTACTTGTTCCTTGATCATATATTTATAAATATATATATA
TGTTTATCTATATACATATGTTTATACATATCCAAATATATAAAGATGAT
GTCATACACCTCCTTGATTCTAGAATCACAACTTATTTAATGTTCCTTTA
AGTTATCAGTTCCCTAGCCTTCATACTGTAGGAATCCCAGGACCTTCTCA
GTGTCTCTCCAGATTATGTTCTGTCTCTAGTCCTCAAGTTTTTACAGTTG
TCCCACAGGGAATTTCTCAGTGTACCTTTAATATTGAATATGTGCTCATT
TAATCCTAGTCTGACTTATTCTTGCGAAAAGGTGGCAGGGGTTGACGGAA
CTGGATACCATAAATATAGGCTTAAAGACTGGAAATGCGTGCCCTTATCC
TGAACGTCTAAAGTCATGGTATCAAGTTGGGCATTTCCTTCGCGAAGACT
GCCGATAAGACCCTGATCCATGACTCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_a23.g1 MSMg01no105_a23.g1 CHROMAT_FILE:
MSMg01no105_a23.g1 PHD_FILE: MSMg01no105_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:33 2005
         (379 letters)



>mm_chr7_99068754_99069532
          Length = 779

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttatatatagttgtttgtacatatataaacatgcatatagcgatatacatccatctgg 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 201 tcttatatatagttgtttgtacatatataaacatgcatatagtgatatacatgcatctgg 260

                                                                       
Query: 61  atttatatgaacatacatccatatctatacctatatatataatccttaacaaaacccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttatatgaacatacatccatatctatacctatatatataatccttaacaaaacccata 320

                                                                       
Query: 121 cattcctatttgcataaatgtacttgttccttgatcatatatttataaatatatatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcctatttgcataaatgtacttgttccttgatcatatatttataaatatatatatat 380

                                                                       
Query: 181 gtttatctatatacatatgtttatacatatccaaatatataaagatgatgtcatacacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttatctatatacatatgtttatacatatccaaatatataaagatgatgtcatacacct 440

                                                                       
Query: 241 ccttgattctagaatcacaacttatttaatgttcctttaagttatcagttccctagcctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ccttgattctagaatcacaacttatttaatgttcctttaagttatcagttccctagtctt 500

                                                                       
Query: 301 catactgtaggaatcccaggaccttctcagtgtctctccagattatgttctgtctctagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catactgtaggaatcccaggaccttctcagtgtctctccagattatgttctgtctctagt 560

                              
Query: 361 cctcaagtttttacagttg 379
           |||||||||||||||||||
Sbjct: 561 cctcaagtttttacagttg 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)