BAC Information

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BAC

Clone NameMSMg01-105D23
Chromosome7 (Build37)
Map Location 60,272,937 - 60,273,340
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668783, EG620782, LOC100040692
Downstream geneGm1865, LOC100040718, LOC668789
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105D23.T7 (MSMg01no105_d23.b1)MSMg01-105D23.TJ (MSMg01no105_d23.g1)
ACCAG319653AG319654
length730726
length of high quality
(start - end)
404 (131 - 534)388 (71 - 458)
definitionCHROMAT_FILE: MSMg01no105_d23.b1 PHD_FILE: MSMg01no105_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:49 2005CHROMAT_FILE: MSMg01no105_d23.g1 PHD_FILE: MSMg01no105_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTGTCTATAATTTGCGGCGCTAAACGACTACTATATTCAGAAATGCGCG
GAATTCCTCAGAATTTCCCTTATGACTGAGTAAAGGAAAGGCAGAAGAAT
GACCCCAAAGTTACCCGAGTATTGACACCCAGAGCCTCAACAATAACCCA
GGAATCACAGAAGGAAAAGAAATCAAGTGACACCACTCAGTGTTTAATTT
CGAGAAACCTGTTAGCTGTCTGAGAATTCCATAATCAGTTGCATAAATGA
GTGTGAAAGACAGGGAAGGGAACTGGGAGGAAATACATGCCTATTAGCAG
GGTGAGTGAGACACACAGCTTAACATTATGCAGCGCTATTTGGAACCAGA
CAGAGTGTTGGCTAGCATGAAACATAAACACACATGTATATAGCAGAGGC
TCTGACTATAGATGTGTCTTTGGTGGACAATACAACACTGAGGTTCATGT
TGATAGACAATCATGAACCAGAGGGAGCCAAACTGCTCAATTTGATTTCA
TCCAGAACTCTGTTTCCCCTCTTAGCTTATTGTTAGCCAGACTTTAACGC
TCTGAATACCTTTCACTGTGTCACACATCACTGAATGTGAACATCCCTTT
ATGCCCTGATATGACGCCATTAGTGTTTGATCCTACCTACAAAATGGATC
TGAATAGCTCCTAGTAACACAAGTCTTCACATTTCTGTTACAGATGCCTC
CGATAGTGAAGCCATTCCTGATCCCTCACC
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTAGGCTTCTTGTATGTTCATGGGCATCT
CTTTCTTTAGGTTTGGGAAGTTTTCTTCAATAATTTTGTTAAAGATATTT
GCTGGCCCTTTAAGTTGAAAATCTTCATTTTCATCTACTCCTATTATCCA
TAGTTTTGGTCTTCTCATTGTGTCCTGGATTTCCTGGAAGTTTTGAGTTA
GGATCTTTTTGCATTTTTCATTTTCTTTGACTGTTGAGCCCATGTTCTCT
ATGGAATCTTCTTCACCTGAGATTCTCTCTTCCATCTCTTGTATTCTGTT
GCTGATGGTTCGTTCCATCTATGGTTCCAGATTTCTTTCGAACGGATTCT
ATCTCCAGCCTGGTCTCACTTTGGCTTTTCTTTATTGTGTCTACTTCCCT
TTTCAATTCCATCACCTTTTCGGTTGCGTTTTCCTGTTTTTCTTTAAGGA
ATCCTACCTCTTTGGCTGCGTTTTCCTGTTTTTCTTTAAGGACTTGAAAC
TCTTTAACAGCGTTCTTCTTGTATTCCTTTAACCTGGCTTATCAACGTTC
TTCCTGATGTCCTCTCACATCATCATGAGACATGCTTTTAAATCACCCGT
CAAGTTTCTATGTCGTGTTGCTACGTCCCGCTATCGGCTGACGCGCCATT
GCACACTTCTGACGCCCGCCTATGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_d23.b1 MSMg01no105_d23.b1 CHROMAT_FILE:
MSMg01no105_d23.b1 PHD_FILE: MSMg01no105_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:49 2005
         (404 letters)



>mm_chr7_60272737_60273540
          Length = 804

 Score =  735 bits (380), Expect = 0.0
 Identities = 398/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcctcaacaataacccaggaatcacagaaggaaaagaaatcaagtgacaccactcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcctcaacaataacccaggaatcacagaaggaaaagaaatcaagtgacaccactcag 260

                                                                       
Query: 61  tgtttaatttcgagaaacctgttagctgtctgagaattccataatcagttgcataaatga 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtttaattttgagaaacctgttagctgtctgagaattccataatcagttgcataaatga 320

                                                                       
Query: 121 gtgtgaaagacagggaagggaactgggaggaaatacatgcctattagcagggtgagtgag 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gtgtgaaagacagggaagggaactgggaggaaatacatgcctattatcagggtgagtgag 380

                                                                       
Query: 181 acacacagcttaacattatgcagcgctatttggaaccagacagagtgttggctagcatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacagcttaacattatgcagcgctatttggaaccagacagagtgttggctagcatga 440

                                                                       
Query: 241 aacataaacacacatgtatatagcagaggctctgactatagatgtgtctttggtggacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacataaacacacatgtatatagcagaggctctgactatagatgtgtctttggtggacaa 500

                                                                       
Query: 301 tacaacactgaggttcatgttgatagacaatcatgaaccagagggagccaaactgctcaa 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 501 tacaacactgaggttcatgttgatagacagtcatgaaccagagggagccaaactgttcaa 560

                                                       
Query: 361 tttgatttcatccagaactctgtttcccctcttagcttattgtt 404
           |||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 561 tttgatttcccccagaactctgtttcccctcttagcttattgtt 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)