Query= MSMg01no105_m23.b1 MSMg01no105_m23.b1 CHROMAT_FILE:
MSMg01no105_m23.b1 PHD_FILE: MSMg01no105_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:33 2005
(508 letters)
>mm_chr7_106188791_106189697
Length = 907
Score = 905 bits (468), Expect = 0.0
Identities = 497/508 (97%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 1 gaattcc-ccatggtgtcccgc-acagttgaagaaaatgtcacctcatgggcacctatct 58
||||||| |||||||| | || ||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gaattccaccatggtggcaggccacagttgaagaaaatgtcacctcatgggcacctctct 260
Query: 59 atttgttttacaaataaaaagagatacaggaggggttggagtgttagtcttcctaccaat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgttttacaaataaaaagagatacaggaggggttggagtgttagtcttcctaccaat 320
Query: 119 gactcactccatgacccaacttttatctactaggctgcaccgggtaatagtcctcctgtg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactcactccatgacccaacttttatctactaggctgcaccgggtaatagtcctcctgtg 380
Query: 179 ccccaggagcaccactgtctagcaaccaatcctctccagggtaggctgctgagggtactt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccaggagcaccactgtctagcaaccaatcctctccagggtaggctgctgagggtactt 440
Query: 239 agccaaaccaccgcactgggatagaagaaaagcaacctgtgagcatgtaaatcccacatt 298
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaaaccactgcactgggatagaagaaaagcaacctgtgagcatgtaaatcccacatt 500
Query: 299 ataaacttgaaagcaacgatacaacagagctgggaagacaacaagtcataaaaacccaag 358
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 ataaacttgaaagcaacgatacaacagagctgggaagacaa---gtcataaaaacccaag 557
Query: 359 gagcctataaaaaagaaagagactaataacagtgggttaaagtgagcacagataccaggt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gagcctataaaaaagaaagagactaataacagtgggttaaagtgagcacagataccaggt 617
Query: 419 ggaacgtaaattcagtaacagtatcaatgaatgggaactaaaatggtctggaattcagct 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ggaacgtaaattcagcaacagtatcaatgaatgggaactaaaatggtctggaattcagct 677
Query: 479 caacacagagctctccctgcttgctcac 506
||||||||||||||||||||||||||||
Sbjct: 678 caacacagagctctccctgcttgctcac 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 907
Length adjustment: 10
Effective length of query: 498
Effective length of database: 897
Effective search space: 446706
Effective search space used: 446706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_m23.g1 MSMg01no105_m23.g1 CHROMAT_FILE:
MSMg01no105_m23.g1 PHD_FILE: MSMg01no105_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:34 2005
(242 letters)
>mm_chr7_106331201_106331842
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 240/242 (99%)
Strand = Plus / Minus
Query: 1 cactactcactgcaggctaggcctgcccaaggaaagcacagccaaaagggacacaggcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cactactcactgcaggctaggcctgcccaaggaaagcacagccaaaagggacacaggcac 383
Query: 61 ccgcacggtccggatcgtcccgcacgtgctcaaactccctgcccacgttccagctgctgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccgcacggtccggatcgtcccgcacgtgctcaaactccctgcccacgttccagctgctgg 323
Query: 121 accgtactaacgtctgagagagaggcttgggagaaggacaaggcggtcgctggggcaacc 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 322 accgtactaacgtctgagagagaggcttgggagaatgacaaggcggtcgctggggcaacc 263
Query: 181 aggagtagtttcatacaccgggactccggctcccttgcccgtattctatagactctaaac 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 aggagtagtttcatacaccgggactccggctcccttgcccgtattctatagactctgaac 203
Query: 241 cg 242
||
Sbjct: 202 cg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
