BAC Information

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BAC

Clone NameMSMg01-106A24
Chromosome7 (Build37)
Map Location 17,230,208 - 17,372,414
singlet/doubletdoublet
Overlap geneLOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5
Upstream geneLOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1
Downstream geneFkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106A24.T7 (MSMg01no106_a24.b1)MSMg01-106A24.TJ (MSMg01no106_a24.g1)
ACCAG320248AG320249
length1,0651,245
length of high quality
(start - end)		278 (13 - 290)605 (86 - 690)
definitionCHROMAT_FILE: MSMg01no106_a24.b1 PHD_FILE: MSMg01no106_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:57 2005CHROMAT_FILE: MSMg01no106_a24.g1 PHD_FILE: MSMg01no106_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,230,208 - 17,230,484)(17,371,851 - 17,372,414)
sequence
CCCTAAAAGGTACCCCCTATTCACCTCCAAAGGCTTAAATAGACTTTGTT
CCCCCAACAGATGGAACCCGTTCCCCCAAGCTGTTCCCCAGTGTGTGTTC
TTTGGCCACACACTCACCACAGACCAAGGTTCTGCCTGCGCCCACCCACA
GGGCTAAGCTTCCCTCTCTCAGGTCAAGCCTGGTGCACAATAGGCCTGAC
TGCCCCGAGGGAGAAAGACACAGAGCAGCACTGCAGTAATGACTTTGCTG
GGCTGGAGAAACAGCTGACTAAGACTTAAGATTTCTACCAGAAGGATTCA
GCAGGTGGAGGGAGTGGGGTGAAGGAGATAGCCCATGGTCAGTTCAGGAA
TTAGCTTTCCTCAGAGCCTGTAATCCTTAGTGTCAGAGAAGGAGCCCCGA
GGGAACCTGTATGATTTCCACAGTTCACAAAGCGTCGATTTAGCTTTTTT
TCTTTCTTTCCTTTTCTTTTCTTTCTTTCTTTCCTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTTTTTTTTTTTTTTGCCCCCAACCGATTCTTTTCGCG
GGTTGGCGGTCCTGAACCTTCTCCCACTCTTCCCCTTCCCTTCTCTCTCT
TTCTCCCTTCATCCTTTTATTTTCACTTATCTTATTTCCTCCTTCCTCCT
CCCCCCTCCTGCGTTACTACTATCTCTTTTTCTTCTTTTCCCTCTCTTCC
CTCCCTCCTTCACTCCCCTTCTTTCTTCTCTCTTTTTCTCTTTTCTCATC
CTTCTTCTTCTACTCTTTTCGTCACCACCTTCTCCCTTCCTCATCTTTCT
CCCTTTCTCCCTCTTTCTCCTCTTCCTTTTTTCTTCTCTCTTTCTTCTTT
TCCTTTCCTCTTATCTCTTCCACACCTCCTCCTCCTCTTTCTCCTCTCTT
CTCTTATTTACCCTCTTTTCCACCCCTTTACCTTATATTCTTTCCTCTTC
CCTCCTTTCATTTCCCTCTCTTTCCTCTTTTTCTCCTCTCTTTCTTCCCT
CTTTCTCTATTTCTTCCCTTTTACTTCATCTCTCTCTTCTCTCCTTTCCC
CATTTCTTCTCTTTA

CCGTCTTTTATTTTAGCATGGAGCCGGCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCCTAAGGCCTCTGGAAGAGCAGCCA
GTGCTTAACTGCTGCCCCTTCTCTCCAGCCCTCACACTATGTTTTTGGGG
AAGACTCAAACAACAGAGGGTGGGGGGCAAACTGAAAAGCCACAACGGGC
TGGTGGTGTGGAGCTTCCTCAGCCCTGGCCTTGCTTACCTGGACCATGGT
TGAATTGATCTCCCGCTGGATACAGGATTGCTGCAGACAAGGTTGGAAGG
ATTAGTGTCAACTGTCATCATGGCTCCCACTACTATGCTAGAAACAGCAA
TGCCCCAAACCTGCTCCAATCCAGCCCCAGCAACCAACCCCTCTATCCCC
AACTTTTAAGGTAGTCTCTTGTAGCCCAGGCTAGCCTAGAACTCCCTATG
TAGCCAAGGGTGACCCTGGGCTCCTGAAATATTTGTAGTCATTCTATTTA
TTACTGGAGTCACAGGTGTGAGCCAGCATGTCTGGTTTATGCAGTACTGA
GGATGGAGCCCAGGGCTTTGAGCATGCTAAGGCAAACTCTCTACCCAATG
AACCACAACTGCAGTCTCAAGGATTGCACACTAATCCCAAGTTTAAATCT
AAATTCACACTAACCTTTTGGAAGATTCAAAAGACAAAGAGGGGAAGGGG
AGGAGGGACTACACTGGCCCAGGGGCTAGGCTGTTGGGCCTCCACACATC
AGCTCACCGGTATTTTACATGAGTTGTCTTTTGGGTTCATATGAGGTAGC
AAACTGCAGATGTGGTGGGGGGAAAAAAAATCATCGTCCTTGCCACCTAA
GTTACCCCCAATTCCCAAAACCAGCCCAAGATACCCCTCGTTCCTCCCCG
TCCTTTCCCTTTTTAAAGACAAGGCCCTCTTGGTAGCCCAAGGCTGAACT
TCCTACTTCCCCTATTGCATTCAATGATAAACCCTTGAAACTCCTGGGTC
CCTTCCTTCCATCCACCTTTCCCCAAGGCATCGGGGTATCTCACGGGTTA
TGAAGCCCGCTTTCTTGGCCCCATTTTTTCATCTAATTTGGGATAAGGTG
TATATTCCCCCTCTGGTGTAATCCCTGTATACCTTTTTCTTGTGGGTAAT
AACCCTTCAACTCTTTTTTTCTTAGTTTTAAATACTTCACACAGTGTTCC
ACTCCTAATAAGCCTCTCCTCTCCCATAAAAAACTTCATTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_a24.b1 MSMg01no106_a24.b1 CHROMAT_FILE:
MSMg01no106_a24.b1 PHD_FILE: MSMg01no106_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:57 2005
         (278 letters)



>mm_chr7_17230007_17230684
          Length = 678

 Score =  520 bits (269), Expect = e-152
 Identities = 275/277 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   cccctattcacctccaaaggcttaaatagactttgttcccccaacagatggaacccgttc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 cccctattcacctccaaaggcttaaatagactttgttcccccaacagatggaacccgttc 261

                                                                       
Query: 62  ccccaagctgttccccagtgtgtgttctttggccacacactcaccacagaccaaggttct 121
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tccaaagctgttccccagtgtgtgttctttggccacacactcaccacagaccaaggttct 321

                                                                       
Query: 122 gcctgcgcccacccacagggctaagcttccctctctcaggtcaagcctggtgcacaatag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcctgcgcccacccacagggctaagcttccctctctcaggtcaagcctggtgcacaatag 381

                                                                       
Query: 182 gcctgactgccccgagggagaaagacacagagcagcactgcagtaatgactttgctgggc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcctgactgccccgagggagaaagacacagagcagcactgcagtaatgactttgctgggc 441

                                                
Query: 242 tggagaaacagctgactaagacttaagatttctacca 278
           |||||||||||||||||||||||||||||||||||||
Sbjct: 442 tggagaaacagctgactaagacttaagatttctacca 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no106_a24.g1 MSMg01no106_a24.g1 CHROMAT_FILE:
MSMg01no106_a24.g1 PHD_FILE: MSMg01no106_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:58 2005
         (605 letters)



>mm_chr7_17371851_17372855
          Length = 1005

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggaagagcagccagtgcttaactgctgccccttctctccagccctcacactatgtttt 60
           |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||
Sbjct: 564 ctggaagagcagccagtgcttaactgctgagccatctctccagccctcacactatgtttt 505

                                                                       
Query: 61  tggggaagactcaaacaacagagggtggggggcaaactgaaaagccacaacgggctggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggggaagactcaaacaacagagggtggggggcaaactgaaaagccacaacgggctggtg 445

                                                                       
Query: 121 gtgtggagcttcctcagccctggccttgcttacctggaccatggttgaattgatctcccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgtggagcttcctcagccctggccttgcttacctggaccatggttgaattgatctcccg 385

                                                                       
Query: 181 ctggatacaggattgctgcagacaaggttggaaggattagtgtcaactgtcatcatggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggatacaggattgctgcagacaaggttggaaggattagtgtcaactgtcatcatggct 325

                                                                       
Query: 241 cccactactatgctagaaacagcaatgccccaaacctgctccaatccagccccagcaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccactactatgctagaaacagcaatgccccaaacctgctccaatccagccccagcaacc 265

                                                                       
Query: 301 aacccctctatccccaacttttaaggtagtctcttgtagcccaggctagcctagaactcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacccctctatccccaacttttaaggtagtctcttgtagcccaggctagcctagaactcc 205

                                                                       
Query: 361 ctatgtagccaagggtgaccctgggctcctgaaatatttgtagtcattctatttattact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ctatgtagccaagggtgaccctgggctcctgaaatatttgtagtcattctatttattact 145

                                                                       
Query: 421 ggagtcacaggtgtgagccagcatgtctggtttatgcagtactgaggatggagcccaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 144 ggagtcacaggtgtgagccagcatgtctggtttatgcagtactgaggatggagcccaagg 85

                                                                       
Query: 481 ctttgagcatgctaaggcaaactctctacccaatgaaccacaactgcagtctcaaggatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  ctttgagcatgctaaggcaaactctctacccaatgaaccacaactgcagtctcaaggatt 25

                                   
Query: 541 gcacactaatcccaagtttaaatc 564
           ||||||||||||||||||||||||
Sbjct: 24  gcacactaatcccaagtttaaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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