BAC Information

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BAC

Clone NameMSMg01-106D06
Chromosome7 (Build37)
Map Location 66,501,885 - 66,502,496
singlet/doubletsinglet
Overlap geneUbe3a
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818
Downstream geneLOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf, EG664849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106D06.T7 (MSMg01no106_d06.b1)MSMg01-106D06.TJ (MSMg01no106_d06.g1)
ACCAG320354AG320355
length1,2561,256
length of high quality
(start - end)
642 (92 - 733)610 (92 - 701)
definitionCHROMAT_FILE: MSMg01no106_d06.b1 PHD_FILE: MSMg01no106_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:17 2005CHROMAT_FILE: MSMg01no106_d06.g1 PHD_FILE: MSMg01no106_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATAACTTTNNAAAACTATCGCGCTATAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTCTGAGCCCTATATAGTTAATGGGGTTA
TTTGATTTTCTGGAGTCACCTCCTTCAATGAATTAGAAAGAACAATCTGC
AAATTCATTTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAA
GGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACT
ACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAA
GTAGACCAATGGAATAGAATTTAAGACCCAGAAATGAACCCACACACCTA
TGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAG
ACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTGTTTATCATGTAGA
AGAATGTGAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAA
GTGGATCAAGGAGCTCCACATAAAACCAGAGACACTGAAACTTATAGAGG
AGAAAGTGGGGAAAAGGCTCGAAGATATTGGCACAGGGGAAAAATTCTTG
AATAGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGA
CCTCATGAAACTGCAAAGATTCTGCAAGGCAAAAGACACCATCAATAAGA
CAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCA
GATAGAGGACTAATATCCAATATATATAAAGAACTCAGGAAGGTGGACTC
CAGAAAATCAAATAACCCCATTATATACATTTTCAAAATAGTAATTTACC
AAACACAAGTTATCTACCTCAGATATAATCAATCGATATAGCCTATCAAT
CTTGTCAAAAGTCTGCTAATATATATTATTTTTATACTTATTTATATGTA
TATATATTATCCTAAGCTTGAAAATATTTACTTACTCACACACCCTCACT
CTCCACAGGTTTAAAACAAAGAACTCTCAAGTATAAAACTTTATCCCCCA
GGCCTTCAAAAAAAAATTGGGCCACGGTTTCAAAAGAAACGTCCGGGAAT
GTGGTTTAGGAAAACCCCCAAAAAAGCTATCCCTTTTTGGTTGGGTCCTT
GGATCAACACGGGTGTACAAAATCTGGAAAAGGTAAATATGCCCCTAATA
TTGCCTGAAACACAAAGTGGGGGTGCTATTATTTTTGTTTCCTCCCTAAG
AATAAA
NCCATATCTATTTNATAACAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAAAAAAAGGTATAGAA
ATATAAGTAGGAAGATAAACTGCTTAACAAGACTTAAATTCCAATGAAAG
GGTGCTTTAAAAGATTTAAAACTAAGAAAAAAAAAGTAGGAAGATCAGAT
TATCACAACACATTTAAGAACAAATTTTAGAAACCTCAATGTTTAAAAAG
AAAATTAAAATCTTTATATTTAGATATCAAATTAGTATAAGCCATAATTA
TTTACAATGTCAAACACGTATTAAAAAACAAGACTGTTACTTTCTATTAA
GTTGGGTTGTGGTATTCATAGTCTTGAAATTAAATGAAGTGTTTGCAAAC
TGTAACCTGAGCAAACACTAAGGTGTAGGATAATCACCTTTATTTTGAAG
TGATATTATACTGAGAGATTTGTATTCATTTATACACTGTCTATGTATTC
AGAAAAAGCAAGGATAAGTACTTGCAGGAAAAACTATTTCCTTCAAAACC
TAAAACATTATAAAAAAAAAAATCCCTTGAAAAATGTCTGCCAATTTCTG
CAGTAGACAATTTAAACTCAAATATAACAGTGTTCATAGATCTTTAAGAT
ATTTAAATGCTATGCACCATTCTAATCATAATTCCTGTGGTTCTATAAGG
AAATTAGATTTCCCTAAAAAGCCCTATCTGCCGCCACCGTGTATATGGAG
CATTATGTTTGCTAGATAATTGTCGGCTAGTTTTAGTTTTAATATCTGCT
GGTTATTTTTCTTCATTTTTTAATATATTAGCTAATATAGACATACTTAT
AAAGCACCAAAGAGTATCCCATTTTTACTGGGTGGAACATAAGCCAAATT
TCCCTATTCCGAACATCTGGTTTACAGAACAAATTCCGGTGATGGCCACC
AGCAAACCTTTTGCTAAACTTCCGGTCACCGGAATGGCTAACCCAGGATT
TTACCATGAGGGACTGCCTGTTTCTCCTTAGGGGAAACCCTGGCCTCCCA
AAAAGAAAAAAATACCGGTTCACCCAAAAAAATCCTTAACTGGGGGAAAC
AAACCCAAGGCTTTCCAAGGGGAAAATTTTTTTTTTAAAACCCAACTCTC
CTAAGGGTTTTAAAATATTCCCCAAAATATAGGTTTCTAAATTCGAACAC
AGACTATCTTTTAATTTTCTCCCAAATGTGGTATTCCCAAAGGAACAAAC
TCGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_d06.g1 MSMg01no106_d06.g1 CHROMAT_FILE:
MSMg01no106_d06.g1 PHD_FILE: MSMg01no106_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:18 2005
         (610 letters)



>mm_chr7_66501685_66502696
          Length = 1012

 Score = 1122 bits (580), Expect = 0.0
 Identities = 604/612 (98%), Gaps = 2/612 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtatagaaatataagt-aggaagataaactgcttaacaagacttaaattccaatgaaag 59
           ||||||||||||||||| ||||||||||||||   |||||||||||||||||||||||||
Sbjct: 812 ggtatagaaatataagtaaggaagataaactggaaaacaagacttaaattccaatgaaag 753

                                                                       
Query: 60  ggtgctttaaaagatttaaaactaagaaaaaaaaagtaggaagatcagattatcacaaca 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 752 ggtgctttaaaagatttaaaactaagaaaaaaaaagtagaaagatcagattatcacaaca 693

                                                                       
Query: 120 catttaagaacaaattttagaaacctcaatgtttaaaaagaaaattaaaatctttatatt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 catttaagaacaaattttagaaacctcaatgtttaaaaagaaaattaaaatctttatatt 633

                                                                       
Query: 180 tagatatcaaattagtataagccataattatttacaatgtcaaacacgtattaaaaaaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 632 tagatatcaaattagtataagccataattatttacaatgtcaaacacatattaaaaaaca 573

                                                                       
Query: 240 agactgttactttctattaagttgggttgtggtattcatagtcttgaaattaaatgaagt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agactgttactttctattaagttgggttgtggtattcatagtcttgaaattaaatgaagt 513

                                                                       
Query: 300 gtttgcaaactgtaacctgagcaaacactaaggtgtaggataatcacctttattttgaag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtttgcaaactgtaacctgagcaaacactaaggtgtaggataatcacctttattttgaag 453

                                                                       
Query: 360 tgatattatactgagagatttgtattcatttatacactgtctatgtattcagaaaaagca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgatattatactgagagatttgtattcatttatacactgtctatgtattcagaaaaagca 393

                                                                       
Query: 420 aggataagtacttgcaggaaaaactatttccttcaaaacctaaaacattat-aaaaaaaa 478
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 aggataagtacttgcagaaaaaactatttccttcaaaacctaaaacattataaaaaaaaa 333

                                                                       
Query: 479 aaatcccttgaaaaatgtctgccaatttctgcagtagacaatttaaactcaaatataaca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaatcccttgaaaaatgtctgccaatttctgcagtagacaatttaaactcaaatataaca 273

                                                                       
Query: 539 gtgttcatagatctttaagatatttaaatgctatgcaccattctaatcataattcctgtg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gtgttcatagatctttaagatatttaaatgctatgcaccattctaatcataattcctgtg 213

                       
Query: 599 gttctataagga 610
           ||||||||||||
Sbjct: 212 gttctataagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1012
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1002
Effective search space:   601200
Effective search space used:   601200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)