Query= MSMg01no106_m17.b1 MSMg01no106_m17.b1 CHROMAT_FILE:
MSMg01no106_m17.b1 PHD_FILE: MSMg01no106_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:44 2005
(361 letters)
>mm_chr7_102019472_102020234
Length = 763
Score = 630 bits (326), Expect = 0.0
Identities = 351/360 (97%), Gaps = 2/360 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctgtacctgaaattacaggtgactgtaatccactatatatatatgtggatat 63
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctggagctgaaattacaggtgactgtaatccactatatatatatgtggatat 263
Query: 64 tgtgaacgaagcccgtgtgccctgcaagagcagcaaattctcctaatcatcaatgcatct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtgaacgaagcccgtgtgccctgcaagagcagcaaattctcctaatcatcaatgcatct 323
Query: 124 ccttagctcaccagtgacttcttttttagtgtattgtgggaaaagagtgaaaaatgctga 183
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 ccttagctaaccagtgacttcttttttagtggattgtgggaaaagagtgaaaaatgctga 383
Query: 184 caaaacaaagaagcatctaactatagtctgtgttgagtgttcgttggtagggcctcaaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaaacaaagaagcatctaactatagtctgtgttgagtgttcgttggtagggcctcaaga 443
Query: 244 atcatggggaattcctcaagcacattgtaatgacaggaagccaggtgtaaattatagcca 303
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 444 atcatggggaattcctcaagcacattggaaggacaggaagccaggtgtaaattatagcca 503
Query: 304 aggttgttaattaattttgtcttagctagttgcttttgaaaaaaa--cagaacccatagg 361
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 aggctgttaattaattttgtcttagctagttgcttttgaaaaaaaaacagaacccatagg 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 763
Length adjustment: 9
Effective length of query: 352
Effective length of database: 754
Effective search space: 265408
Effective search space used: 265408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_m17.g1 MSMg01no106_m17.g1 CHROMAT_FILE:
MSMg01no106_m17.g1 PHD_FILE: MSMg01no106_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:44 2005
(443 letters)
>mm_chr7_102118235_102119082
Length = 848
Score = 820 bits (424), Expect = 0.0
Identities = 440/448 (98%), Gaps = 5/448 (1%)
Strand = Plus / Minus
Query: 1 gaggaaatggcatcatgtagcagctatgtgataaaagatttccctagtgacatggtttgg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaggaaatagcatcatgtagcagctatgtgataaaagatttccctagtgacatggtttgg 589
Query: 61 atccagattttgtagttcatcaatgtaatactacagtttggtgttaagcatataagagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 atccagattttgtagttcatcaatgtaatactacagtttggtgttaagcatataagagga 529
Query: 121 taatgccaagcatggattacagtgggcttatttattcagatctgaatttgtgctcacag- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 taatgccaagcatggattacagtgggcttatttattcagatctgaatttgtgctcacagt 469
Query: 180 ----caaaaaaaaagagccaccatttttgaagtatattttgcacttacattttttcaaac 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaaaaaaaaaaaaagagccaccatttttgaagtatattttgcacttacattttttcaaac 409
Query: 236 tctccatgaggatattgatatccaggcacatttggtaatcatctatgttatgttcataac 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tctccatgaggatattgatatccaggcacatttggtaatcatctatgttatgttcataac 349
Query: 296 ctatttctataagacagaggtcctgccttgctttcagtaactctcgctaggcagctttaa 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctatttctataagacagaggtcctgccttgctttcagtaactctcgctaggcagctttaa 289
Query: 356 ctcccatggccccaattgtaaagatgttgtaatgttctatccatattgttctcaaatgct 415
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 288 ctcccatggccccaattgtaaagatgttataatgttctatccatattgttctcaaatgct 229
Query: 416 aagtagatgtttaggaactagagatggc 443
||||||||||||||||||||||||||||
Sbjct: 228 aagtagatgtttaggaactagagatggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 848
Length adjustment: 10
Effective length of query: 433
Effective length of database: 838
Effective search space: 362854
Effective search space used: 362854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
