BAC Information

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BAC

Clone NameMSMg01-107F05
Chromosome7 (Build37)
Map Location 30,552,596 - 30,552,797
singlet/doubletsinglet
Overlap genenone
Upstream geneSirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik
Downstream geneZfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107F05.T7 (MSMg01no107_f05.b1)MSMg01-107F05.TJ (MSMg01no107_f05.g1)
ACCAG321168AG321169
length1,4281,302
length of high quality
(start - end)		230 (36 - 265)313 (143 - 455)
definitionCHROMAT_FILE: MSMg01no107_f05.b1 PHD_FILE: MSMg01no107_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:03 2005CHROMAT_FILE: MSMg01no107_f05.g1 PHD_FILE: MSMg01no107_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:09:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGCGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAT
GTATATATATACCTTTTCACACTCATATAATGAGAATTCAATGTCGATCA
TACCCCTTTTCAAACTCTGGCCCATGTCTCTGCCTTCTGTTTGCTGTGAT
TAAAAGTATGTATCACTGTGCCTCAAGTCTTGGTGGATTTTGTTATTGTT
GGTTGATTTTGTTGTTGTGGAAGCAGAGTCTTATTAGGAAGACTGTCTCC
GGGAGAGGGAGGGAGGGAGGGAGGTTTTTTTTTTTCTTTTCTCTTTTTCT
TTTTTTTTTCTTTTTTTTCTTTTTTTCTCTTTTCTTTCTTATTTTCTTTT
TTTTTTTTTCCTTTTCTTTTATTCTCTCCTTTCTTTTTTTTTTTTTTTTT
TTTTCTTTTCATCTTTATACTCTTTATTTCTTTATTTTTTCTTTTCTTCC
CCCCTTTTTTTTCCCTCCCCCCTTTCTTTTTATTTTCTTTTTTTTTAATA
TTATAATTCTTATTTTTTTTTTTTTAATTCTCTCTTTTTTTTTTTTCTTT
TCATTTTATTTACCTTCTTTTTTTTCTTTCCTTCTTATTCCTATTTATTT
CCTTTTACTCTTTTTTCCTACTTTCCTTTTTCTCTATATTCTTTTTATTT
CATTTCTTATTTACATTATTATTATTTCATCCTTCTTTTTCCTTTCTTTC
TATCTCTCTTTATTTTTCTTTTTTTTTCTTTATTTTCTTACTATCCCTTT
TCTTTTCTCTTTATTATTTTTTTACTTTATTTCTTTTTTTTTATTTTTTT
CTCTCTTCTATTCTTTTTTTTTACTTATCTTTTTTTTTATCTCATCTTAC
TTATCTTTTCTATTTTTTATTTCCTCTTTATTTTTTTATCTTTTCTTTTA
TCTATTTTCTACTATCTATTTTTTTCCTTTTTAATCCTTTATTTTATTTC
TTATTCCTTCTACTACTTTTATTTTCTATTTATCACTCTCTCCTATTTTA
TCTTATTTTTCCTTTATTATCTTTTTTCTCTTTCTCTTTCTTTTTTTCTC
CTCTTTCTTATTCTTTTTTTTTTTTTCTTCTTTCATTTTTCATTCTTCTT
CATTTTCTTTTCTATTTCTTATATATTTCTATCTTCTTCATTCGTTTCTC
ACTTTCATTTTATCTTTATCTCTATCTCTTTTCATATTTTCATTTCATTT
CTATCTCTACTTCTATATATCTTCTCTATCAATTTCTTATCTCTTACTTC
TTTCTGTTCTTCTTCTTCTACCCTTTTCTTTTTTATCCTCTTATTTTTTC
TACTTCTTTTTTCTTTCTTATTTTCCTATTCTTCTCTTATTATCATANTA
TTACTTGTTCTTTTTTCTCTATTTATTTTCTTACCTCTCTTTCTATTATA
AATTATTTTTTTTACCTATCACCTTTCA

CAGTCTCTTNTAACCATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATGAGGTCCCCAGANGGNNCAGNGA
NNAAAGAGNANGGACCTTTTAAGCCCCCGNCCNGAGNNCAANTCCCAGCA
ACCACATGGGGGCTCACAACCATCTGCAGTGGGGTCTGACGCCAACCTTT
GGTGTGTCTGAAGAGAGCAATGGTGTACTCATAAATAAAATAAGTAAGTA
CATCTAAAAAAAATTAAAAAACAAAAACAAACAAACAAACAAACAAAAAA
ACCCGATGAATTCATGAAATTCTTAGGCAAATGGATAGAACTAGAAAATA
CCATCCTGAGTGAGGTAACCCAATTGCAAAAGAACACTCATGGTATGCAT
GTCCATTTTTTTTTTGGCATTAGAGNCCACTTCTTTGAGATTCTGGCATA
TACCACCTACCTTCTGTTGCCACACAGTTATTTTATATATATATATATAT
ATATATGTTTTCTCTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCC
TGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTG
CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCAGC
TATATTTCTATAATTATACTGTATAACTTTATATACAATTATATTCAATA
CTAATACTAATATGTACTATGTAATGAATACAAAAAGCATGTATTTACTA
TAAGTAATTACTTATTGCATTAAAAATGCTTTTTTTTTTTTTTCACACGA
GAGGAATTATTTTCCTTAAATGAGAAGATCCACTTTGTAATCCTGCCTCT
TGAGGTGGCAAGAGCCATCTTTCATTTGGACTAAACCTTCTGCTGACACG
TTGGATCAACGAAGCTTGCCCCCCCTTGCCTGGCTGGCTCTGGCCCTCTC
TTAGAAAGCCCCATCCTTCTTTTGGCATTAAAAACCCACTTTCTTTGAAA
TTTCGGCAATAAACCATCTTACCTTCCGGGGGGTAAACAAGCTATTAATG
CTATTCCAAAAACATAATATTATTTTAAAAAGGTTAAAATATGGGTAATT
ATATTAAAAACGGCAAATTTTGTCTAAACACCTTCTTTTCGTACTCTAAA
AAAAAAATACAATTCAGGTATTGAACTAAACCGATATTATAGCATAGATA
TCATCTAGACTATAACTCATGCCTGTGGATGACATCCTCATCAACTCGGT
TGCAATCCTATATAAATCTTATCACCGTATTACACAAGTNCATCATACAC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_f05.b1 MSMg01no107_f05.b1 CHROMAT_FILE:
MSMg01no107_f05.b1 PHD_FILE: MSMg01no107_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:09:03 2005
         (230 letters)



>mm_chr7_30552385_30553013
          Length = 629

 Score =  313 bits (162), Expect = 4e-90
 Identities = 194/210 (92%), Gaps = 11/210 (5%)
 Strand = Plus / Minus

                                                                       
Query: 12  atatgtatatatataccttttcacactcatataatgagaattcaatgtcgatcatac--- 68
           |||| ||||||||||    ||| ||||||||||||||||||||||||||||||||||   
Sbjct: 413 atatatatatatata----ttctcactcatataatgagaattcaatgtcgatcatactgg 358

                                                                       
Query: 69  cccttttcaaactctggcccatgtctctgccttctgtttgctgtgattaaaagtatgtat 128
           |    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 357 c----ttcaaactctggcccatgtctctgccttctgtttgctatgattaaaagtatgcat 302

                                                                       
Query: 129 cactgtgcctcaagtcttggtggattttgttattgttggttgattttgttgttgtggaag 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cactgtgcctcaagtcttggtggattttgttattgttggttgattttgttgttgtggaag 242

                                         
Query: 189 cagagtcttattaggaagactgtctccggg 218
           |||||| |||||||||||||||||||||||
Sbjct: 241 cagagttttattaggaagactgtctccggg 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 629
Length adjustment: 9
Effective length of query: 221
Effective length of database: 620
Effective search space:   137020
Effective search space used:   137020
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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