BAC Information

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BAC

Clone NameMSMg01-107P17
Chromosome7 (Build37)
Map Location 53,493,885 - 53,494,215
singlet/doubletsinglet
Overlap genenone
Upstream geneCd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c
Downstream geneOtog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-107P17.T7 (MSMg01no107_p17.b1)MSMg01-107P17.TJ (MSMg01no107_p17.g1)
ACCAG321551AG321552
length1,2982,104
length of high quality
(start - end)		340 (132 - 471)---
definitionCHROMAT_FILE: MSMg01no107_p17.b1 PHD_FILE: MSMg01no107_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:38 2005CHROMAT_FILE: MSMg01no107_p17.g1 PHD_FILE: MSMg01no107_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCTTCTTTANAACATTGCGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCGGGCCACCTTCCGCCACTAAAATGCCCCTGATNCAGNT
GCTTTGCAGCTCCACTCCTTAAGAAGCCTGGCTGCGGTGCTCTGGCAGGT
TAGCTGCCAGGACAGGACCTGCCTCCCTCAGAGCTAGGGCTGGGGCCTGG
AAGAAGCAGGGGTGGGGCTGGGAGGAGAAAGGACAGCCCGGAGGCGGGGT
CACCTGTCCTGCAGTTCAGCCGGGCGGCCCTGGAAGAAAAGAAGTCTCGT
TGTGTGGATGTGCTAATGGTGGCTTAGTTAGTGAGGCTGGCAGTGTTTTC
CAGAGTGGTCCCCACACACATTAAGATGGAGGAGACACAGGGCAGTAGGG
GTTAGGTTTTTTTTGAGACTGCTTTTCCTTTCTGAAAGAGCATCTCATGT
GGCAGGCCTTGAAGTGAATGTGTAGCAGAGGCAGGCACAGTTGTAACTTC
AGAGACACAAGAAGGCTCTTCTCTAGATCTCTCTGCCATTTGCCAGCAAG
CAGCCTATTCTCATGGTGGCTAAATTATGGCCTAGACTAAGGTATAAGTA
TAAGATGTATGCCTGGGGAAATAACTTGCGAGAATGATCCGGATTCTCAG
CTTCTGATCTAGTACCACTCTGGTGCGGTGTAAAACACTGTGCTCATAAG
CTACTTGGTGAAGGAGAGCTCTATTCCATCTTAGGCTTCCAGGCTCTGTT
TCCATTGCTGACCGAAGGTCATGGCCGTGACCCCATTCAGGAGCGTGAAA
TCAATGCGTCCCTGCTGGCTCTACTTTCGTGCTCTGAACTCTCGTGCTCC
CAATTTTCATGTTTTATCCCTGATTGCTTTATAAGGGCTTAGGACCCTCC
TGTATTATGGATGTCTGCGGTTCCCCCATTTGCTTTTTCTGTAATTTCTC
TTACTCATGTCTGGAATCCTCCGCCCTCCCCTCCTATTTACTGCCCCCTC
GGCCTTCACTTATACACTTGGAGGCCGTTCCTCCCCGCTACCCACTTTAC
CCAGGCTTAACTCCTAACCCTAGGCTTTTTGTCTTCCCTTCCTGACCTCC
TTGTCTCATTGGTCATGGATTCTTCGGCTCAACTGGCCTCCTATTAGCAC
TTCCTTTGTGCCCTTTATCTCGTCCTATATGTTCCCTATAACCTGCGGTC
CTGTAATTGGGCTCTATAGGTTGGCTCTATCTACATGGGCTCCTCATTCA
AACAAATCCTCNCTGTGCGTATCCGATAACTCTCTCATTTATCCTTAT

TGAGTGTGATTAACATAATAGAGAGGAGGAGGTGAGTATGGAGTAGGGAA
NATTCTATAGGAGATATANTTATATATTTTATTAAGGTAGGGGAAAGATT
ATATTATAGTGGGGAGGATGGTGGGGGGGAACCTCCTTTTTTAAGAGGGG
GAGGTGGATGATAAGAGAAGTGGGATAAGAGAAGTAAGGATTTAGAGAGA
TGCTCCGCTTATAGAGAGGGGNGATTATTGATATAAAAAGCACCACTTGT
GGGTAATATTTTATTATGTATATAAGGGGCGAGAATTGTAGTGGAGTAGA
TTGGTAAATGAAGAGATGTGTATATCTGGATTGATTAATGTTATGTTAGA
AAGTAATGATAGTTGACATTAGTAATTTGTTGATAAGGTGGGAATCATGG
GTTGGAATGGATGTAATGAGATGTTGATGAGAAATGTGGAGAGGTAATGG
TATATGTGAGTGAGATATATGTGAGATATATGTGAGGTATTTGTAGGTAG
TTGTGTGATATGATGGTGTTGATGATGGGTAGTGAATGTTTTAGGTAAGA
GAAGTGGATATAAGTAATTTTGATTATAGTGTTATGTTAAAGTTTGATTA
TGGTTGTTGAAGTGATGGAGAGTTAGAATGATGGCAGATGGGAATATTTG
TTTTGTGTTTTTATTTGTTAAAGTTTGAATGTGTATAAGGAGTGTGTATG
ATATTGTGGAGGTTGTTAGATATGGATGATATGTTATAATTAAGTATAAG
AGGAGAATAGATGATGTAATATGGATGATAGTAGTGGGTATGGTAATATG
TGTGCGAATAAGTGGTTTGATGGTGGGGTTATGAGAGAGATAAAATGTGA
TATATGTATGAATAGTTGTTATGATGAGTATAATATGGGGTGTGTTGTGT
GAATTTATGTTGTGATGATAGAATATTTAGAATTGTGTAGTGTGTGAATA
ATGGGTTTGGTGATGAGTGTGTGAAAGTTGATGGTCTGTAATGTTGGTGG
GAGGAATGTGGATTGATTGTGTAGTGTGTGTGGATATGAGATGGTGTTGT
AAAGTATTATAATATGGTAGTTGTATATAGTAGTGAGTTATTAGGTATGG
TAGTGATGGGTGTTGAGGGAGATGAAAGATTGGGTGATATTTGATATGTT
GTATTGACAGTGATGTATATGGATAAGATGGTAGTATTTGTGGTTATAGT
AGCATTATAATATGTGTTTATTGTATAAATTTGAGTGGAATGTTAATGTG
GTGATATTGTTAGATTGGTGTTGATAGTTATGATGTGCTATTGGTGTTGT
TAGTTGTTTTTGAATGACAATAGTTATGGTTTTGATATGTTGTGTGAGTA
GTAGTATGGTGNTCTATAAGTGTGTTATGTGATTTACCTTGATGAGATAT
AGATGTGTATAATTAATGATGAGGGTTTATTATGAGAGTATAATGTTAGG
GGCGTGGTTAGTATGGTAGTGAAGTAGTGTGTATGTATTAGAATGATGAT
ATAGTATATTAGTGTATTAATGTGGTGTATTGTGAGATGTGAGTGAGGAA
GTAAGTGAGTATTGTTATTATTGAGTTAGGTATGATGGCTGTAGATGTAA
TGGTAGACTATGATATTGGATAACTAGTTGATGGTTGTATATGTGTTGAT
AGTGTAATGTGTTAGAGGTAGTGATTTGTATGATATGTGAGATGTTTGTT
ATTGAGTTCTAGGATATGTATAGTAGTATATATGTTGATTATTGTATGAA
ATATGTGTATATAGGATGGTGTAGATGTTGATGGAAGAGAGATGGGAAGG
TAGGTAGGAGATGTATGGTAGAGTAAGCAGATGTTGGATATGTGTATTTG
ATGTGTGCTGAAAGATATGTTGTGTGTATAAGTTGTTTAGTGATGTGTGG
GTTGATAGATAAGATGTTATTGTGTGTGTGATAACTATAGTTGATGTTAG
TGTGATGTTAGTTAGTANTTAATGAGTAAGGATGAATTTGATGCTGTAAG
ATTGTGTGTTGGAAGTGTTATATGTGTGAGTAGTGATTAGAGTGGGTGAA
TTGAGTGTAGTTGGTGTGGATTGGTATGAGTGATTGGGTGATTAATGTTA
GTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no107_p17.b1 MSMg01no107_p17.b1 CHROMAT_FILE:
MSMg01no107_p17.b1 PHD_FILE: MSMg01no107_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:38 2005
         (340 letters)



>mm_chr7_53493670_53494409
          Length = 740

 Score =  511 bits (264), Expect = e-149
 Identities = 316/346 (91%), Gaps = 21/346 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcggtgctctggcaggttagctgccaggacaggacctgcctccctcagagctagggct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 216 ctgcggtgctctggcaggttagctgccaggacaggacctgcctccctcagagctaggggt 275

                                                                       
Query: 61  ggggcctggaagaagcaggggtggggctgggaggagaaaggacagcccggaggcggggtc 120
           ||||||||||||||||||||||||||               |||||||||||||||||||
Sbjct: 276 ggggcctggaagaagcaggggtgggg---------------acagcccggaggcggggtc 320

                                                                       
Query: 121 acctgtcctgcagttcagccgggcggccctggaagaaaagaagtctcgttgtgtggatgt 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 321 acctgtcctgcagttcagccgggcggccctggaagaaaagaagcctcgtcgtgtggatgt 380

                                                                       
Query: 181 gctaatggtggcttagttagtgaggctggcagtgttttccagagtggtccccacacacat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gctaatggtggcttagttagtgaggctggcagtgttttccagagtggtccacacacacat 440

                                                                       
Query: 241 taagatggaggagacacagggcagtaggggttaggttttttttgagactgcttttccttt 300
           ||||||||||||||||||||||||||||||| |||  |  ||||||||||||||||||||
Sbjct: 441 taagatggaggagacacagggcagtaggggtcaggggtagtttgagactgcttttccttt 500

                                                         
Query: 301 ctgaaagagcatctcatgtggc------aggccttgaagtgaatgt 340
           ||||||||||||||||||||||      ||||||||||||||||||
Sbjct: 501 ctgaaagagcatctcatgtggcccaggcaggccttgaagtgaatgt 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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