BAC Information

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BAC

Clone NameMSMg01-108D03
Chromosome7 (Build37)
Map Location 66,293,441 - 66,293,546
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp10a, LOC621446, LOC668811, LOC668813
Downstream geneLOC668815, EG668818, Ube3a, LOC100040985, LOC100041010, LOC100041029, LOC100041051, Pwcr1, LOC664788, Snrpn, Snurf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108D03.T7 (MSMg01no108_d03.b1)MSMg01-108D03.TJ (MSMg01no108_d03.g1)
ACCAG321708AG321709
length735745
length of high quality
(start - end)
106 (119 - 224)106 (85 - 190)
definitionCHROMAT_FILE: MSMg01no108_d03.b1 PHD_FILE: MSMg01no108_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:58 2005CHROMAT_FILE: MSMg01no108_d03.g1 PHD_FILE: MSMg01no108_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCACATCTTCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCAGTCTCTCCTGTTATACAACTTTTATCAATA
AAGAAAAATGTAATACCAAGATCAAGAGATTCTATTTTAACTGTTACCTG
TGACTGCTGCTTTCTGGGCTTTTGTTTAGTGTGATAATTAGGTCTGAACC
CTCACTGCCCACATACCTCTCATGCTGAGAAAAGAAGGACTTATTTCTCT
CAGGAACAGTCTCTGGCTTGTAACTACAACAGTGTCATTCTACTGAGCTA
AAATGCCATGCTCAGTCCATGCTCTACTATTTATCTCTGAGAAATCTCTG
AACCTCAACCCTTGTCTCATGATACTTGGAGACGCCCATAAAGAACAGGG
TTCATCTCACTTTTTGTTACCTATAATTTCTACGCTCTCCAGGTTTTACC
TGAATGACATCATATATGGCCCTCTTTTTCTGCTCCAGACCCCGCCTTTC
ACGTACCGACCTCCCCCCCGATTACCGTGTATCCATAATCTCCCCCGACC
ACAATCCAATACTATTTTGAATCTCTAATGGGCTTTCCTTTTATCCCCAT
CACTCTTAACTTTTTTGTCCCTATCTACTTTACCTCCTTTCTTCCTACTT
TGTCCCCTCTCTTTACTCTCCTGTCTTTTTCTCCGTGCATTATATCTTAT
TATTTCCTACCCAATCATATTTCTTCTTTTCTTCC
CTCTCNNCCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTA
TCCCGTTTTTTAGTAGGTTTATTTGATTTTCTGGAGTCCATCTTCTTGAA
TTCTTTATATATTGGACATTAGTCCTCTATCTGATTTAGGATTGGTAAAT
GTCGTTTTCTAGTCTGTTGCCGGCCTTTTTGTCTTATTGACAGTGCCTTT
TGCCTTACATAAGCTTTGCAATTTTATGAGGTCCCATTTTTCCCCTGTGC
CCATATCCTTCTAGTTTTTCCCCACTTTCTCCTCTGTTATTTTCCGCGTC
CTTCTCACCAAGCGGCATTCCTTGACTCCCCTACACTCTCGACTTTGTCC
ATGAACGCAATTCCTACTTGACCTTTCTTCTCTTCATATACCTTATTTGC
ACCTACCTATCATTATCTTCCATATTTGTCTAATTATTTTGCTATACCAT
TGCTCCTTTTTTCCTCTTTTCACCTCTTCCAATTTTCTTACTCCTCTATC
ATTATTACCGCCCTGCCCATAGCTTTATATTTCCATCCTACTCTTTTACC
TCTTTCTTTCTTATCTTCCTTTCTTGACTTCTTTTATCCCCCTCCTCCAT
CAATATCGTTTCCCTTCCCTTCCCCTTATTTTACATTTCTCTTTTTTTTT
TCTTTTTCCCCTTTCCCCCACCCCCCTTTTATTTCTTTCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_d03.b1 MSMg01no108_d03.b1 CHROMAT_FILE:
MSMg01no108_d03.b1 PHD_FILE: MSMg01no108_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:58 2005
         (106 letters)



>mm_chr7_66293241_66293746
          Length = 506

 Score =  205 bits (106), Expect = 6e-58
 Identities = 106/106 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatcaagagattctattttaactgttacctgtgactgctgctttctgggcttttgttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agatcaagagattctattttaactgttacctgtgactgctgctttctgggcttttgttta 247

                                                         
Query: 61  gtgtgataattaggtctgaaccctcactgcccacatacctctcatg 106
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtgtgataattaggtctgaaccctcactgcccacatacctctcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)