Query= MSMg01no108_f16.b1 MSMg01no108_f16.b1 CHROMAT_FILE:
MSMg01no108_f16.b1 PHD_FILE: MSMg01no108_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:11 2005
(557 letters)
>mm_chr7_136026305_136027261
Length = 957
Score = 1023 bits (529), Expect = 0.0
Identities = 550/559 (98%), Gaps = 6/559 (1%)
Strand = Plus / Plus
Query: 2 acacacgacatattttgatcgtattcgtccttgttcctcctcttaacccctttgagattc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 acacacgacatattttgatcgtattcgtccttgttcctcctcttaacccctttgagattc 261
Query: 62 atctggtcttctcacatcctcccttcctgttcttttatttaaaataacccgtgaagtcca 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atctggtcttttcacatcctcccttcctgttcttttatttaaaataacccgtgaagtcca 321
Query: 122 atttgtgctattcataatctcaggtgtggagccaccaatgagagttcagtcaacccacca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atttgtgctattcataatctcaggtgtggagccaccaatgagagttcagtcaacccacca 381
Query: 182 cagcccctcctttagagaaaactcctcccctcctccctccatactggaagattgacttcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagcccctcctttagagaaaactcctcccctcctccctccatactggaagattgacttcc 441
Query: 242 ttt---ttctcccttttcctctccccctctctttctttcgagacagtgtaaaacctgtct 298
||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttcccttc--ccttt-cctctccccctctctttctttcgagacagtgtaaaacctgtct 498
Query: 299 ggcttagaactcactatgcaggccagggtggccttgatctcacagagattcacctgcctc 358
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 499 ggcttagaactcactatgcaggccaggctggccttgatctcacagagattcacccgcctc 558
Query: 359 ctctttctgaagtctgggattaaagcaaggcccatcacacctgactcagctttcttgata 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctctttctgaagtctgggattaaagcaaggcccatcacacctgactcagctttcttgata 618
Query: 419 caatgctgaaagtgcttgaatatttatttccttttctgcataaataccatggatctttgc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caatgctgaaagtgcttgaatatttatttccttttctgcataaataccatggatctttgc 678
Query: 479 taatcccatatccataagaggaaactgaagtttacaggggtcagtgctgtccaaggctta 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 taatcccatatccataagaggaaactgaagtttacaggggtcagtgctgtccaaggctta 738
Query: 539 tccacgggcaaagctggat 557
|||||||||||||||||||
Sbjct: 739 tccacgggcaaagctggat 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_f16.g1 MSMg01no108_f16.g1 CHROMAT_FILE:
MSMg01no108_f16.g1 PHD_FILE: MSMg01no108_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:11 2005
(475 letters)
>mm_chr7_136137076_136137950
Length = 875
Score = 847 bits (438), Expect = 0.0
Identities = 468/482 (97%), Gaps = 7/482 (1%)
Strand = Plus / Minus
Query: 1 caaacccacagcactgtgcctgacattttttgagactccaataacttgccgctaaacaat 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 488 caaacccacagcacagtgcctgatattttttgagactccaataacttgccgctaaacaat 429
Query: 61 aaactgatgagattgtccgttaatactgtgttcactcttgacaggagctttgaagtatag 120
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 428 aaactgatgagattgtccattaatactgtgttcactcttgacagaagctttgaagtatag 369
Query: 121 atctgtgaaatgtagtactccatgtctggcagatgttgcctagcagccccgacactttat 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 atctgtggaatgtagtactccatgtctggcagatgttgcctagcagccccgacactttat 309
Query: 181 catctacacctggagaccatcctttctgctgctggttccaacacagccatgttgaagtga 240
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 308 catctacacctggagaccgtcctctctgctgctggttccaacacagccatgttgaagtga 249
Query: 241 catcttaactaaacgacttacattactctgcagccaaagcactaagca-------ctatc 293
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 248 catcttaactaaacgacttacattactctgcagccaaagcactaagcaaacttctctatc 189
Query: 294 ctggaacgtgagctcagcactattcattgctgtgtagggttgaccttggcactccatgtc 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ctggaacgtgagctcagcactattcattgctgtgtagggttgaccttggcactccatgtc 129
Query: 354 ccattggcttaaccctcacgttgttaaatcaaggaaccctactagcaagacctaaaacaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ccattggcttaaccctcacgttgttaaatcaaggaaccctactagcaagacctaaaacaa 69
Query: 414 ggatttcccagaaaagcatctcaaatgcatgccacaagcattgccatttcttctttaaga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ggatttcccagaaaagcatctcaaatgcatgccacaagcattgccatttcttctttaaga 9
Query: 474 cc 475
||
Sbjct: 8 cc 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space: 402225
Effective search space used: 402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
