BAC Information

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BAC

Clone NameMSMg01-108N21
Chromosome7 (Build37)
Map Location 24,598,974 - 24,599,486
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222
Downstream geneLOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N21.T7 (MSMg01no108_n21.b1)MSMg01-108N21.TJ (MSMg01no108_n21.g1)
ACCAG322201AG322202
length702708
length of high quality
(start - end)
514 (83 - 596)514 (90 - 603)
definitionCHROMAT_FILE: MSMg01no108_n21.b1 PHD_FILE: MSMg01no108_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:52 2005CHROMAT_FILE: MSMg01no108_n21.g1 PHD_FILE: MSMg01no108_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATACTATTCGCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXTCAAAA
GAGGATCCGCGGAATTCCTCTTTGCAATAAGGGAGTAGTAATGTTGTCTA
GTAATCATGAGTAATCACTACTCCAATGGATACACTAAATAACCTGTAGC
TGATCAATGTTTCTTGCCAGCCTTGACTTGCTTTCAAGTTGGTTTTTATC
AACATTAACATCCTTCAACAGGAGGTCAAACCCAGAAGTAGATCCAAGCC
ACTTTCTGCTAGCTTCACTTGTGATGAACTTTTTACCATGTGATAATTTA
TTCTGATAGATGTATAAATTTTGAGTACTTTATAAAGAAAAAAAAAAGAA
ACCTTATTCCCCCCTTTCTAACCAGAATCCTGTTTTCTTAGATGACTCTC
AAATGAATCATTTGGAGAGAATATAGAAATAAAGATTAAAATCACTTTTC
AATGTGTCCCTTTTACTGACTGTAACTTCAACTAGCAGTTTTGAAGTTAG
AGCCCTGTAATTTCTGTGGAGATTGACAAAGGCTACTTACCTTAATCCCC
TGCTGTCATATGATGAGGTGCTGAAAGTATCTCACCTAAAAGGAGCCCAG
GCATGTCAGCAAATATAGGAAAGTGTCATAGACTTAATATAAGTAAACGA
TTTTGGTGGCCTTTTTTGTTTGTTTGCTTGCTTTTGCTTTTTTTTGGTTT
TA
ACCTACCCACCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACT
TAAAGAGATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAA
AAGAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAA
AACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATC
CAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAG
TAGACACAATAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAACC
CTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACA
AGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACACCATAGAGAACATCG
GCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTAAAAAC
ATCCAGGAAATCCAGGACACAATGAGAAGACCAAACCTACGGATAATAGG
AGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACATCTTCA
ACAAAATTATTGAAAAAAACTTCCCATATCCTAAGAAGGAGATACCCATG
AACATACAAGAAGCCTACAGAACTCCCAATAGACTGGACCAGAAAAGAAA
TTCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n21.b1 MSMg01no108_n21.b1 CHROMAT_FILE:
MSMg01no108_n21.b1 PHD_FILE: MSMg01no108_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:52 2005
         (514 letters)



>mm_chr7_24598774_24599687
          Length = 914

 Score =  911 bits (471), Expect = 0.0
 Identities = 504/517 (97%), Gaps = 7/517 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtagtaatgttgtctagtaatcatgagtaatcactactccaatggatacactaaataa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagtagtaatgttgtctaggaatcatgagtaatcactactccaatggatacactaaataa 260

                                                                       
Query: 61  cctgtagctgatcaatgtttcttgccagccttgacttgctttcaagttggtttttatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgtagctgatcaatgtttcttgccagccttgacttgctttcaagttggtttttatcaa 320

                                                                       
Query: 121 cattaacatccttcaacaggaggtcaaacccagaagtagatccaagccactttctgctag 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 cattaacatccttcaacaggaggtcaaacccagaggtagatccaagccactttctgctag 380

                                                                       
Query: 181 cttcacttgtgatgaactttttaccatgtgataatttattctgatagatgtataaatttt 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cttcacttgtgatgaactttttaccatgtgatcatttattctgatagatgtataaatttt 440

                                                                       
Query: 241 gagtacttta--taaagaaaaaaaaaagaaaccttattcccccctttctaaccagaatcc 298
           ||||||   |  |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gagtac---agataaagaaaaaaaaa-gaaaccttattcccccctttctaaccagaatcc 496

                                                                       
Query: 299 tgttttcttagatgactctcaaatgaatcatttggagagaatatagaaataaagattaaa 358
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 497 tgttttcttagatgactctcaaatgaatcatttggagagaatctagaaataaagattaaa 556

                                                                       
Query: 359 atcacttttcaatgtgtcccttttactgactgtaacttcaactagcagttttgaagttag 418
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 557 atcacttttcaatgtgtcccttttactgactgtaacttcaactagcaggtttgaagttag 616

                                                                       
Query: 419 agccctgtaatttctgtggagattgacaaaggctacttaccttaatcccctgctgtcata 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 617 agccctgtaatttctgtggagattgacaaaggctacttaccttaatcccctgctgtctta 676

                                                
Query: 479 tgatgaggtgctgaa-agtatctcacctaaaaggagc 514
           ||||||||||||||| |||||||||||||||||||||
Sbjct: 677 tgatgaggtgctgaacagtatctcacctaaaaggagc 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)