Query= MSMg01no109_f02.b1 MSMg01no109_f02.b1 CHROMAT_FILE:
MSMg01no109_f02.b1 PHD_FILE: MSMg01no109_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:29 2005
(423 letters)
>mm_chr7_115098785_115099607
Length = 823
Score = 731 bits (378), Expect = 0.0
Identities = 411/426 (96%), Gaps = 7/426 (1%)
Strand = Plus / Plus
Query: 5 gaattctatacagtgtttcttcctatgctcaaccaccttatctatagtctgaagaacaga 64
|||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctacacagtggtgattcctatgctcaaccaccttatctatagtctgaagaacaga 257
Query: 65 gatgtaaaagatgctctgaggaaggcaattgtcagagtatatacatagaccctcttggat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gatgtaaaagatgctctgaggaaggcaattgtcagagtatatacatagaccctcttggat 317
Query: 125 tcaagaaatttgtgatgatttttttt-------actcagtatacactgagtagctatcac 177
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 318 tcaagaaatttgtgatgatttttttttttttttactcagtatacactgagtagctatcac 377
Query: 178 aagatgcttaactgatttcatgatattaaattctgtttatttgcactattcttatcttta 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagatgcttaactgatttcatgatattaaattctgtttatttgcactattcttatcttta 437
Query: 238 tacactcatatataacttgtaggacttcctgaagacatgaagtgataggaataatcattg 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 438 tacactcatatataacttgtaggacttcccgaagacatgaagtgataggaataatcattg 497
Query: 298 ctactattgaacttctgcaagattttaagctctttgcctttacgtgatttatgtggcaat 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctactattgaacttctgcaagattttaagctctttgcctttacgtgatttatgtggcaat 557
Query: 358 tatttttgctaggattatatatatatatatatatatatatatatatatataaaatattat 417
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 558 tatttgtgttaggattatatatatatatatatatatatatatatatatatataatattat 617
Query: 418 ataata 423
||||||
Sbjct: 618 ataata 623
Score = 74.2 bits (38), Expect = 2e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 371 attatatatatatatatatatatatatatatatatata 408
||||||||||||||||||||||||||||||||||||||
Sbjct: 612 attatatatatatatatatatatatatatatatatata 575
Score = 72.3 bits (37), Expect = 6e-17
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 373 tatatatatatatatatatatatatatatatatataa 409
|||||||||||||||||||||||||||||||||||||
Sbjct: 608 tatatatatatatatatatatatatatatatatataa 572
Score = 66.5 bits (34), Expect = 3e-15
Identities = 49/54 (90%), Gaps = 4/54 (7%)
Strand = Plus / Minus
Query: 371 attatat-atatatatatatatatatatatatatatataaa-atattatataat 422
||||||| |||| |||||||||||||||||||||||||| | |||| |||||||
Sbjct: 622 attatataatat-tatatatatatatatatatatatatatatatat-atataat 571
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 5
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space: 336996
Effective search space used: 336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| |
