BAC Information

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BAC

Clone NameMSMg01-109J19
Chromosome7 (Build37)
Map Location 91,760,512 - 91,760,757
singlet/doubletsinglet
Overlap genenone
Upstream geneTmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik, Mesdc1, Mesdc2, 9930013L23Rik, 2210412D01Rik, Arnt2, LOC100039239, Fah
Downstream geneZfand6, 2610206C17Rik, EG620480, Olfr291, LOC666276, Olfr290, ENSMUSG00000070600, F830104D24Rik, LOC620641, EG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109J19.T7 (MSMg01no109_j19.b1)MSMg01-109J19.TJ (MSMg01no109_j19.g1)
ACCAG322753AG322754
length720722
length of high quality
(start - end)
---248 (76 - 323)
definitionCHROMAT_FILE: MSMg01no109_j19.b1 PHD_FILE: MSMg01no109_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:54 2005CHROMAT_FILE: MSMg01no109_j19.g1 PHD_FILE: MSMg01no109_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCATAATTTGCGGCGCTAAANGAGTCACATTTCGNCACCGCCGNGGAA
NNCNACAGTTTCCANCACGCGCGACCAANNANGAANCCGCACACGGCCCA
ANNGGGGGAACAGGACCCCCCCAGCACNAAGAGCAGCCCACACAAAACAA
AGACACGAAGAAACAGAGGGGCCCAGCCACCAAGANGACACAAAGACAGG
GGACCGCACGACAGGCACCCAACACCCACAGCCACCAGAAAACAGGACAA
TTAAAGCAACAGCCGCCACACAGCAGACCGAGAAAGACAAAAAACCAGAC
CACCCAAACCAGGGTTTTTTTTTTTTAGAAGAGGAACACAAAACCAGAAA
AGAAGGTTTTTTCCCCCCCCCCCCCCCAGCTTCACTCTAGTCTACTCTAG
GGTTTGTGTGAACAGCTCTAAAGAATAAGACCACAGCTCACTCACTGAGT
GAGCGCAGACTAAGCAGCATGTCTGAGTACACCCTGAAACTGAACTTATC
AAGCAACACAAGAATGGATGGCAGTTAATGAACAAAACACACCTGACCTC
CTGTATTATGTTCCATGTCTGCGCCTACAATACTAATTCAACCAATAAAC
CACTCATCCTGCTTACTCTAAAAACTGTCATTTCAACGCCCCAAAAAAAC
TCAAAGTTTTTTTTTTTTTTATAAACCCTGAAGAACAATTATAAAACAAA
TACAAAATAACCATTATCAT
ACCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTTCTTACAGAATTTCTAAAAC
ATTTAACTGAGCATTCTTTGGATTTTTCAGGAAAGGGTCCATGTACTTGA
ATCCTTCTTTTTCATACTAGCTTCTTAGCTTTATGCTTTTCCTCTTTTAA
TGTGTGGGCATTAAGATTATTCATAAAGATGGAGAGATGGCTCAGCAATT
AAGTGTATTTGTTACTTTTAAAGATCTAGATTCTGTTCCCAGATCTCACA
TGGTGTCTCTGTAATTCCCAGTCATTTATTCACATATACAAAATCAATCT
TTTAATATATGTTTTTAAGAGAGCCCGCGCAATGAGGATGTGAAGATGAC
ATGAATAGAATACAGTCGATGAAAGACCTTTACTACTAGAACCTGCTGAC
GCGCCCCAGTGATCTCTAACCTCCGTATCTGTTTCCAGGGCAAGTAGTAT
GTTATTGAGAGGGTAGTATGTTCTTCTAAATTTATACCAGTGAAATGGTA
AGTACTCTTTATTAATTTATTTACAGTAGGCTACTTTACTGATTGTTTTA
ATCCTCACAAGTACTGATTTTTTTACTATTGCAAATATCTACATGACACA
AAATTACTTTGGAATTTGATAATTCTTCTTGACTTATATTCCCTTAAAAT
AACTCCATTTGATTTATATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_j19.g1 MSMg01no109_j19.g1 CHROMAT_FILE:
MSMg01no109_j19.g1 PHD_FILE: MSMg01no109_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:54 2005
         (248 letters)



>mm_chr7_91760404_91761051
          Length = 648

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttttcttacagaatttctaaaacatttaactgagcattctttggatttttcaggaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcttttcttacagaatttctaaaacatttaactgagcattctttggatttttcaggaaag 295

                                                                       
Query: 61  ggtccatgtacttgaatccttctttttcatactagcttcttagctttatgcttttcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ggtccatgtacttgaatccttctttttcatactagcttcttagctttatgcttttcctct 235

                                                                       
Query: 121 tttaatgtgtgggcattaagattattcataaagatggagagatggctcagcaattaagtg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 234 tttaatgtgtgggcattaagattattcagaaagatggagagatggctcagcaattaagtg 175

                                                                       
Query: 181 tatttgttacttttaaagatctagattctgttcccagatctcacatggtgtctctgtaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tatttgttacttttaaagatctagattctgttcccagatctcacatggtgtctctgtaat 115

                 
Query: 241 tcccag 246
           ||||||
Sbjct: 114 tcccag 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)