Query= MSMg01no110_b19.b1 MSMg01no110_b19.b1 CHROMAT_FILE:
MSMg01no110_b19.b1 PHD_FILE: MSMg01no110_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:34 2005
(659 letters)
>mm_chr7_142446082_142447142
Length = 1061
Score = 1160 bits (600), Expect = 0.0
Identities = 644/664 (96%), Gaps = 11/664 (1%)
Strand = Plus / Plus
Query: 5 gaattccttatctcctgcatctcaccctttgtagtatttgcttggtgctcagtcttcagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttatctcctgcatctcaccctttgtagtatttgcttggtgctcagtcttcagc 264
Query: 65 atacagtgcacccttattgatttgttaacaaatcaatgcataaatgaaactttctagaat 124
|||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 265 atacagtggacccttattgatttgttaacaaatcgatgcataaatggaactttctagaat 324
Query: 125 attctagaaaatgctttta--agagtgttccatcctgaacagagaaagggtcttctcttc 182
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 325 attctagaaaatgcttttaagagagtgctccatcctgaacagagaaagggtcttctcttc 384
Query: 183 ccacagtgagtcctatcaaagactacttgcttatcaataaagatccagatgctgtttcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccacagtgagtcctatcaaagactacttgcttatcaataaagatccagatgctgtttcca 444
Query: 243 gctgtttaaggagttttctttattgctcaatgaggctgcaaaacaggattctgtgaaata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgtttaaggagttttctttattgctcaatgaggctgcaaaacaggattctgtgaaata 504
Query: 303 tcctgttgcacactgaaaccttgccttgcagagcatatgcctcctcaggaggaaattcag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctgttgcacactgaaaccttgccttgcagagcatatgcctcctcaggaggaaattcag 564
Query: 363 agtaccaatagaataaaactggggggttaaacacaggagcatatgcagacatttctaact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtaccaatagaataaaactggggggttaaacacaggagcatatgcagacatttctaact 624
Query: 423 gagaaggtatgcctctgagaaaatctgatagcatattttatcactaattatttaatcaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagaaggtatgcctctgagaaaatctgatagcatattttatcactaattatttaatcaac 684
Query: 483 atataagccatttgtcatgtgatacagctttctgtattatctcacaataagttccacaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atataagccatttgtcatgtgatacagctttctgtattatctcacaataagttccacaaa 744
Query: 543 taagtaagtataaacaagtaccagcgagacaagatgaacaaaacaaa-------aaagcc 595
|||||||||||||||||||||||| |||||||||||||||||||||| ||| |
Sbjct: 745 taagtaagtataaacaagtaccagtgagacaagatgaacaaaacaaacaaaaaaaaa--c 802
Query: 596 accacattttatgaataatcaagacagcgaagcattcccagccctcaaagtaaatctctg 655
|||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||
Sbjct: 803 accacattttatgaataaacaagacagggaagcattcacagccctcaaggtaaatctctg 862
Query: 656 tgag 659
||||
Sbjct: 863 tgag 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1061
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1051
Effective search space: 682099
Effective search space used: 682099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_b19.g1 MSMg01no110_b19.g1 CHROMAT_FILE:
MSMg01no110_b19.g1 PHD_FILE: MSMg01no110_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:34 2005
(335 letters)
>mm_chr7_142566911_142567641
Length = 731
Score = 617 bits (319), Expect = 0.0
Identities = 328/333 (98%), Gaps = 4/333 (1%)
Strand = Plus / Minus
Query: 1 ttctctgttgctaagaaagtggcttccgttgtgggatgcctgttggctgactttagattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ttctctgttgctaagaaagtggcttccgttgtgggatgcctgttggctgactttagattc 470
Query: 61 tgtggaagccttccagctgccttcagaggtgcccaagagcttcctggaaccctgcttccg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgtggaagccttccagctgccttcagaggtgcccaagagcttcctggaaccctgcttccg 410
Query: 121 taagtggggccatcctttgagtaatacattaatggtgtgtcctgcgagattgtcacacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taagtggggccatcctttgagtaatacattaatggtgtgtcctgcgagattgtcacacta 350
Query: 181 atatatcactagaggagcaactcgctttggtgatgcatggcttgatggagctgggaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atatatcactagaggagcaactcgctttggtgatgcatggcttgatggagctgggaggag 290
Query: 241 ccattcattcactcaggggtagactggctctggctctgatgccctgtgctgaccccagag 300
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 289 ccattca----ctcaggggtagactggctctggctctgataccctgtgctgaccccagag 234
Query: 301 aggagcgagaggagggagaggagggagaggagg 333
|||||||||||||||||||||||||||||||||
Sbjct: 233 aggagcgagaggagggagaggagggagaggagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 731
Length adjustment: 9
Effective length of query: 326
Effective length of database: 722
Effective search space: 235372
Effective search space used: 235372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
