Query= MSMg01no110_c01.b1 MSMg01no110_c01.b1 CHROMAT_FILE:
MSMg01no110_c01.b1 PHD_FILE: MSMg01no110_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:36 2005
(568 letters)
>mm_chr7_117404726_117405694
Length = 969
Score = 1004 bits (519), Expect = 0.0
Identities = 552/563 (98%), Gaps = 1/563 (0%)
Strand = Plus / Plus
Query: 7 gaattcattatttacctgaggatagttttgatcctcctgctacaaaccgactcttactgc 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcattatttagctgaggatagttttgatcctcctgctacaaaccgactcttactgc 266
Query: 67 ttgcgtgcattctctctctctctcctttctttt-aaaaacttattttgttttagcctctt 125
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 ttgcgtgcattctctctctctctcctttcttttaaaaaacttattttgttttagcctctt 326
Query: 126 cttgactttaatcatctttctcattatccttttttctctttggttactaccctccacccc 185
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 327 cttgactttaatcatctttctcattatccttttttctcttcggttactaccctccacctc 386
Query: 186 cttagaagcacgaaaggctaggctgtaagtgacacctcttcaccaagaggagagcggggc 245
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cttagaagcacaaaaggctaggctgtaagtgacacctcttcaccaagaggagagcggggc 446
Query: 246 ctgagtgtgcttcccttccactcagagcatttgctgacgctgctcatgcgttttcaaggc 305
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 447 ctgagtgtgcttcccttccactcagagcatttgctgacgctgctcatgccttttcaaggc 506
Query: 306 cttgcttaatgaatgtttatcccaacggagcttctatcactaaacttgtgatggttttga 365
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 507 cttgcttaatgaatgtttatcccaacggagcttctatcactaaatttgtgatggttttga 566
Query: 366 acttgcggtactttgtaaatggaatttctttccatttcctgttgcattttattatttcac 425
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 acttgcagtactttgtaaatggaatttctttccatttcctgttgcattttattatttcac 626
Query: 426 aaacagcattataatcacattagcgggggtactaagaataaaaaagaaaaatgaacccca 485
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 627 aaacagcattataatcacattagcaggggtacaaagaataaaaaagaaaaatgaacccca 686
Query: 486 agtcttatttgtaactaaatattttctgtggttttgacaaatgttagccagaaagtctgc 545
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 687 agtcttatttgtaactaaatattttctgtggttttgacaaatgtttgccagaaagtctgc 746
Query: 546 atttctgtttatgcaggtgaaac 568
|||||||||||||||||||||||
Sbjct: 747 atttctgtttatgcaggtgaaac 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space: 535122
Effective search space used: 535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_c01.g1 MSMg01no110_c01.g1 CHROMAT_FILE:
MSMg01no110_c01.g1 PHD_FILE: MSMg01no110_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:36 2005
(553 letters)
>mm_chr7_117557995_117558946
Length = 952
Score = 1017 bits (526), Expect = 0.0
Identities = 547/554 (98%), Gaps = 3/554 (0%)
Strand = Plus / Minus
Query: 1 aatagcaggctagacatctgtgttgatattttaagaaagaaa-aaaaactaaatgaacta 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 752 aatagcaggctagacatctgtgttgatattttaagaaagaaacaaaaactaaatgaacta 693
Query: 60 aattttagttagtgattcaaacacttagtaatgtttcctttcatgacctagaaattagtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aattttagttagtgattcaaacacttagtaatgtttcctttcatgacctagaaattagtc 633
Query: 120 tctttcttgccctcaagggaaaaccaaagggaacatgagtactgccaaacaactgctttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctttcttgccctcaagggaaaaccaaagggaacatgagtactgccaaacaactgctttg 573
Query: 180 tttatcgggctctttcaaagccaatataattttgtcacagcactgttttatacagggtat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tttatcgggctctttcaaagccaatataattttgtcacagcactgttttatacagggtat 513
Query: 240 aattacttcctacataacatctcatttcaaaaaatggatcatatttttttcaaaacaagg 299
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 512 aattacttcctacataacatctcatttcaaaagatggatcatatttttt-caaaacaagg 454
Query: 300 gttaccaaaaaaatcatgacttgaacctctatttaaaattttttattatgtctagaatct 359
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 453 gttat-aaaaaaatcatgacttgaacctctctttaaaattttttattatgtctagaatct 395
Query: 360 aactactgtgttttaacaataaattttgacttgaaaacccactgaagttctctacttctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aactactgtgttttaacaataaattttgacttgaaaacccactgaagttctctacttctc 335
Query: 420 tcattatgttaaacttcattctatgaggagcccactcatcaacacagaaaagtaccttag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcattatgttaaacttcattctatgaggagcccactcatcaacacagaaaagtaccttag 275
Query: 480 aaaattccaaataaacataaatgacgattttgatacacagttcctcttatgaagtagaga 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 274 aaaattccaaataaacataaatgacgattttgatacacaattcctcttatgaagtagaga 215
Query: 540 tctccaaatacatt 553
||||||||||||||
Sbjct: 214 tctccaaatacatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
