Query= MSMg01no110_k15.b1 MSMg01no110_k15.b1 CHROMAT_FILE:
MSMg01no110_k15.b1 PHD_FILE: MSMg01no110_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:19 2005
(340 letters)
>mm_chr7_140052150_140052889
Length = 740
Score = 545 bits (282), Expect = e-159
Identities = 312/322 (96%)
Strand = Plus / Plus
Query: 8 ttcaaggggatgcctttaaacccagctctagctttctagctatttaatagcaatttcctt 67
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcaaggggaagccattaaacccagctctagctttctagctatttaatagcaatttcctt 267
Query: 68 aatatttatctcctacttggcatgagggaagaaattttatacaaggccaatagtttgaat 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aatatttatctcctacttggcatgagggaagaaattttatacaaggccaatagtttgaat 327
Query: 128 tgtgttttatatgattatacatttttatattaaccttaccacagttatgggtgtggaata 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgtgttttatatgattatacatttttatattaaccttaccacagttatgggtgtggaata 387
Query: 188 cttaaaagtaatgtcaggtggggcgtggtggcacgcgcctttagtcctagcacttggaag 247
|||||||||||||||||| ||||||||||||||| |||||||| ||| |||| |||| ||
Sbjct: 388 cttaaaagtaatgtcaggcggggcgtggtggcacacgcctttaatcccagcatttgggag 447
Query: 248 gcagaggcaggtggatttatgagttcgaggccagcctggtctacagagtgaattccagga 307
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 gcagaggcaggtggatttatgagttcgaggccagcctggtctacagagtgagttccagga 507
Query: 308 cagccagggctacacagagaaa 329
||| ||||||||||||||||||
Sbjct: 508 cagtcagggctacacagagaaa 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k15.g1 MSMg01no110_k15.g1 CHROMAT_FILE:
MSMg01no110_k15.g1 PHD_FILE: MSMg01no110_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:19 2005
(567 letters)
>mm_chr7_140216247_140217215
Length = 969
Score = 1073 bits (555), Expect = 0.0
Identities = 565/569 (99%), Gaps = 2/569 (0%)
Strand = Plus / Minus
Query: 1 caagatatttccgaggaacccactctagccctcttgatgttttcaagtcttcagtatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 caagatatttccgaggaacccactctagccctcttgatgttttcaagtcttcagtatttt 710
Query: 61 tgaaaatgtctggaagtgttttattcatgaaaggaaaaaataaacataattaaaatctaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tgaaaatgtctggaagtgttttattcatgaaaggaaaaaataaacataattaaaatctaa 650
Query: 121 tggaaacccggggataaaactctgaaacattgattaagcgctgtcctttcctaattagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tggaaacccggggataaaactctgaaacattgattaagcgctgtcctttcctaattagtg 590
Query: 181 aggagcaaggaccgccaaacctgcaactcggggtttatacgggctgtgccagcctgcagt 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aggagcaaggcccgccaaacctgcaactcggggtttatacgggctgtgccagcctgcagt 530
Query: 241 cagtgctgcaggactagccttgtctaggagtgttttcaaggctagcttggctcttggtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 cagtgctgcaggactagccttgtctaggagtgttttcaaggctagcttggctcttggtat 470
Query: 301 gttaggtgtattccagcctgtagcagagggcacacaggcaaagctgccacaccagctctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gttaggtgtattccagcctgtagcagagggcacacaggcaaagctgccacaccagctctc 410
Query: 361 aggcaggccacacaccccc--acaacttcccctgcagccacccatatggaattgcttgtc 418
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aggcaggccacacccccccccacaacttcccctgcagccacccatatggaattgcttgtc 350
Query: 419 ctttaaatagatgtagctcaagccacatgggatggggacatcaaagccattctgtttgag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctttaaatagatgtagctcaagccacatgggatggggacatcaaagccattctgtttgag 290
Query: 479 acagcccttgagcactctgtgcaaagtatgcatgagctccacccccatgtcccttgggtt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acagcccttgagcactctgtgcaaagtatgcatgagctccacccccatgtcccttgggtt 230
Query: 539 ctgctatagtttagtttatggagcttggc 567
|||||||||||||||||||||||||||||
Sbjct: 229 ctgctatagtttagtttatggagcttggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 969
Length adjustment: 10
Effective length of query: 557
Effective length of database: 959
Effective search space: 534163
Effective search space used: 534163
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
