Query= MSMg01no111_c19.b1 MSMg01no111_c19.b1 CHROMAT_FILE:
MSMg01no111_c19.b1 PHD_FILE: MSMg01no111_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:09 2005
(748 letters)
>mm_chr7_12991872_12993019
Length = 1148
Score = 1359 bits (703), Expect = 0.0
Identities = 740/757 (97%), Gaps = 10/757 (1%)
Strand = Plus / Plus
Query: 1 gttcaataaacataaagagaataaacatgcaccgatgcccccataacacataacacataa 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 193 gttcaataaacataaagagaataaacatgcagtgatgcccccataacacataacacataa 252
Query: 61 gcattaagtgaaataaaatgataaatacaatccagtatttagaacatgaattcaataaaa 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gcattaagtgaagtaaaatgataaatacaatccagtatttagaacatgaattcaataaaa 312
Query: 121 gaataaaaccactgaagaaagttcaatctgaaatggatgtggaattgaaaaagtctatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaataaaaccactgaagaaagttcaatctgaaatggatgtggaattgaaaaagtctatct 372
Query: 181 cctgattttaaaactcagaggaaagccctctaagtagaatggatcgaatggaaaataaat 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 373 cctgattttaaaactcagaggaaagtcctctaagtagaatggatcgaatggaaaataaat 432
Query: 241 tcacaagaaaaatattaaatttgagaggtggggagggactgtgggacaaaatgagaagac 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacgagaaaaatattaaatttgagaggtggggagggactgtgggacaaaatgagaagac 492
Query: 301 gaaattatttttaattataggtacaacagatgagagaaaagaaacttcataacatg---- 356
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 493 gaaattatttttaattataggtacaacagatgagggaaaagaaacttcataacatgttaa 552
Query: 357 ----ataagtggaacagagcagaagagatggctctgccagtaaaatgatcatgagaactt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catgataagtggaacagagcagaagagatggctctgccagtaaaatgatcatgagaactt 612
Query: 413 gaattaagatctccagcacctacataaaatctgggcattatggtacaagcctgcaaggca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattaagatctccagcacctacataaaatctgggcattatggtacaagcctgcaaggca 672
Query: 473 agagttaatgggacacagagatggtgggccccagaagctcattgtctggccaccctagct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agagttaatgggacacagagatggtgggccccagaagctcattgtctggccaccctagct 732
Query: 533 gaaatacaaatacaatcagctggggtttacaaggccatgacaccaggcacaacgc-tata 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 733 gaaatacaaatacaatcagctggggtttacaaggccatgacaccaggcacaa-gcctata 791
Query: 592 tttcatatcaattttcatgtacagttcaaagtaaagcagaaacacattcattatgtatgc 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tttcatatcaattttcatgtacagttcaaagtaaagcagaaacacattcattatgtatgc 851
Query: 652 tcatccatacatgggtgggtctttcccagatcaagtcaattctggaaatctctacaatat 711
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tcattcatacatgggtgggtctttcccagatcaagtcaattctggaaatctctacaatat 911
Query: 712 tttgtcatgtttagtgagcgagttatgctgagaagtt 748
|||||||||||||||||||||||||||||||||||||
Sbjct: 912 tttgtcatgtttagtgagcgagttatgctgagaagtt 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space: 839844
Effective search space used: 839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_c19.g1 MSMg01no111_c19.g1 CHROMAT_FILE:
MSMg01no111_c19.g1 PHD_FILE: MSMg01no111_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:09 2005
(654 letters)
>mm_chr7_13096740_13097793
Length = 1054
Score = 1160 bits (600), Expect = 0.0
Identities = 635/654 (97%), Gaps = 13/654 (1%)
Strand = Plus / Minus
Query: 1 tgtccttctgtgaggcagacagggatgagagcaggtttcagccttcagggaaaatgcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 tgtccttctgtgaggcagacagggatgagagcaggtttcagccttcagggaaaatgcaga 952
Query: 61 ttagggagaaggcagacaggaatcttgattcagtgtggcatgtgaggagaaagtgacaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 ttagggagaaggcagacaggaatcttgattcagtgtggcatgtgaggagaaagtgacaga 892
Query: 121 aggcacctgtggcatcacacgtgtaatcccagcatttagggggtagagcagtttcaggcc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 891 aggcacctgtggcatcacacgtgtaatcccagcatttagggggtacagcagtttcaggcc 832
Query: 181 attcttagctaaatagcaagttaggaactttaaggacagcttgggctacatgaaaccttt 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 831 attcttagctaaatagcaagttaggaacttcaaggacagcttgggctacatgaaaccttt 772
Query: 241 tctccaaacaaacgaatcacaacaataaaaccttgaagtctatgtaaagcagcagagttg 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tcttcaaacaaacgaatcacaacaataaaaccttgaagtctatgtaaagcagcagagttg 712
Query: 301 tattgtagtccaggatcaattgttgttgttgttgttgtttttaagtctagattctaaacc 360
||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 711 tattgtagtccaggatcaa---------ttgttgttgttttaaagtctagattctaaacc 661
Query: 361 ttttattctttcataatttcttatacttacagaaatatattacatataaaacatacataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttttattctttcataatttcttatacttacagaaatatattacatataaaacatacataa 601
Query: 421 atatacaaatacctttatcataattcttctgtcaaccctcttctttaagcttaatacctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatacaaatacctttatcataattcttctgtcaaccctcttctttaagcttaatacctt 541
Query: 481 ttagactaaaatataattacatcacttccttcttccctttcttccctacagctctaccat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 540 ttagactaaaatataattacatcacttccttcttccctttcttccctacagctcttccat 481
Query: 541 gtccccccaccctcaaactgatagcttatgtcttagttagggttttaactgctgtgaaca 600
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 480 gtccccccaccctcaaactgatagcttatgtc----ttagggttttaactgctgtgaaca 425
Query: 601 aacaccatgaccaaggcaagtcttaaaaggacaacatttaattgggttggctta 654
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aacactatgaccaaggcaagtcttaaaaggacaacatttaattgggttggctta 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
