BAC Information

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BAC

Clone NameMSMg01-111L19
Chromosome7 (Build37)
Map Location 84,046,282 - 84,046,586
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111L19.T7 (MSMg01no111_l19.b1)MSMg01-111L19.TJ (MSMg01no111_l19.g1)
ACCAG324333AG324334
length1,1681,266
length of high quality
(start - end)
514 (109 - 622)310 (131 - 440)
definitionCHROMAT_FILE: MSMg01no111_l19.b1 PHD_FILE: MSMg01no111_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:26 2005CHROMAT_FILE: MSMg01no111_l19.g1 PHD_FILE: MSMg01no111_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCTCACC
TGAGGAATACCCTTTAAAGGAGAAACACCTGAAAAAAAATTTCAATATCC
TCCTTTATAAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCAC
ACCAGTCAGAATGGCTAAGTTCAAAAATTCAGGTGACAGCAAATTTTGGT
GAGGAAGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAG
CTTGTACAACCACTCTGGAAATCAGTCTGGCGCTTCCTTAGAAAATTGGA
CATAGTACTACCGGAGGATCCCACAATACCTCTCTTGGGCATATATCCTG
AAGATGTTCCAATCTGTAAGAAGGACATATGCTCCACTATGTTCATAGCA
GCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAC
ACAGGAATGGATACAGAAAATGTGGTACATTTACACAGTGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGAC
CTGGAGGGCATCATCCTGAGTGAGGCAACCCAATCACAAAAGAACTCACT
TGATATGTACTCACTTGATACGTGAATCTTAGCCCAGAAACTTAGGATAC
CCAAGATATAAGATACTATTTGCAAAACATATGAAACTCAAGAAGAATGA
AGACCAAAGTGTGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACAC
CCATGGAAGGAATTACAGATACAAAGTTTGGAGCTGAGACAAAAGGATGG
ACCATCTAGAGACTGCCATATCCGGGGATCCATCTCATAATCAGCTTCCA
AACGTTTGACCCCTTTGCATGCACTAACCTGATTTTTGCTTGAAAGGACC
CAGAAATGGGCTGTCTCTTGGGAAGACTATACCAAGGGCCCTGGCAAAAT
ACCAGAAGGTGGATGCTCCCAGCCCAGCTCTTGGAATGGGATTACAGGGT
CCCCCCATTGGTAGGAGTTAAAAAAAAGGTACCCAAAGGGAGCCTGAAAG
GGAATCCGGCAAACCCTTATAAGGGGGGGAAACCAACAATTATTGAAACT
TAACCCAATTATCCCCCTCTGGAGAAAAGGGGTCCCTCTAAGCGTGTCCT
TATTTGTATCCTCAAAAA
TACGACTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCCTATAAAGCCCGCCTACATGCACACACACACACACA
GACCCCCTTAAACACCCACACACCCAGANACAGACAGAAATACACGCATG
CACATGTACTACTGAGGATTGAACCCAAAGTCTTGCACATGCTAGCTCAT
TTTTTTTATATGCAGGAAAAAAATTCCTGAGGTAAGGCAATCCTCTCTTC
AAGAGCAACAGTCATCCATTTGTATACTTGCAAGCCTTAGTTTTTCAAAA
TCACTCATACTAAGTACTACATAATATGTACCATATATGGCTGTTGTCAT
TGCCCTTCAGTCCTGTCTGGCACTCCAAGTTTCTGGAACAGTTTCTGTTT
GGAGGAAAGAAATTTGTGCTCTTGTGACAGGCAAATAGACACACAATAGG
TGCGAGAGTTCTGCCAGCTTCCGGCCATCACTGGAAAGAGAGGCCCATTG
GACACAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAAAGG
GGTAGTGGGTGGGTAGGGGAGTGGTCCTTTCTCTACTTTTTCTCTCTCTT
CCTCCCATCCACCTCCCTCTCTCACTCACTCCCTTTTCCTTTCTTCCCTT
TTTTCTTCTTTTCTTCCTCTCTCTCCCCATTCTCCTTCCTCCTATCTCTT
CTTTTTTTCCTTCTTTTTTCTATCCTTTTCTTCTTCTTTTTCTCTTCTCT
CTTATCATTTTCCTCCTTTCTTTTTTTTCTCTCTCTCTCCCTCTCTTCCT
TCTTCTCTCATATTTTTTACCTATCTCTTCTTCTCCCTCTATTTTCTTCC
ATCTTTCCCTCCTTTTCTTCTCTCTCTCTTTTCCTTTTATTGTTCTTCTC
CCCAATTCTTTTTCTTTTACCTTACTTTACTCCTTCTTTTTTCTTTTCTA
CCTTTCTTTCTATTCCACCTTTCTTTTCTATCATCCTCTTCTTCTCTCTT
CTCCTCCTCTATTCTCATCTTCTTTTTTTCTTCCTCTTCTTTCTTACTCT
CTCTTCCTTCTCTCTTTCTTCTTCTCTATCTCTTTTCTCTTCACTATCAC
TTCCTTTCTACTTATCTTACTATCTTCTATACTTCCTTTATACTCTCTCT
CTTNCTACCTCTTTTTACTTATGCTTCTCTCTTCTTCTCTCTCCATCCGT
TCCACTCTCTCTCCTCACCACTCTCTATTCCTTACATCCCCTCTCTTCCT
CNTCTCCTATCTTNTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_l19.g1 MSMg01no111_l19.g1 CHROMAT_FILE:
MSMg01no111_l19.g1 PHD_FILE: MSMg01no111_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:26 2005
         (310 letters)



>mm_chr7_84046013_84046720
          Length = 708

 Score =  536 bits (277), Expect = e-157
 Identities = 299/307 (97%), Gaps = 2/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   acagaaatacacgcatgcacatgtactactgaggattgaacccaaagtcttgcacatgct 63
           ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acagacatacacgtgtgcacatgtactactgaggattgaacccaaagtcttgcacatgct 515

                                                                       
Query: 64  agctcattttttttatatgcaggaaaaaaattcctgaggtaaggcaatcctctcttcaag 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agctccttttttttatatgcaggaaaaaaattcctgaggtaaggcaatcctctcttcaag 455

                                                                       
Query: 124 agcaacagtcatccatttgtatacttgcaagccttagtttttcaaaatcactcatactaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 454 agcaacagtcatccatttgtatacttgcaagccttagtttttcaaaatcactcatactac 395

                                                                       
Query: 184 gtactacataatatgtaccatatatggctgttgtcattgcccttcagtcctgtctggcac 243
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtactacataat--gtaccatatatggctgttgtcattgcccttcagtcctgtctggcac 337

                                                                       
Query: 244 tccaagtttctggaacagtttctgtttggaggaaagaaatttgtgctcttgtgacaggca 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 336 tccaagtttctggaacagtttctgtttggagggaagaaatttgtgctcttgtgacaggca 277

                  
Query: 304 aatagac 310
           |||||||
Sbjct: 276 aatagac 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 708
Length adjustment: 9
Effective length of query: 301
Effective length of database: 699
Effective search space:   210399
Effective search space used:   210399
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)