Query= MSMg01no111_n14.b1 MSMg01no111_n14.b1 CHROMAT_FILE:
MSMg01no111_n14.b1 PHD_FILE: MSMg01no111_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:41 2005
(713 letters)
>mm_chr7_98831330_98832442
Length = 1113
Score = 888 bits (459), Expect = 0.0
Identities = 507/529 (95%), Gaps = 12/529 (2%)
Strand = Plus / Minus
Query: 1 cacaacagttttgaatgtcagagccagtgttactgttcatatagtggctaatgtttccat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 527 cacaacagttttgaatgtcagagccagtggtactgttcatatagtggctaatgtttccat 468
Query: 61 tacataataaatgacttataattccaagtgacacgtacagatgctatagctgcctacata 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 467 tacataataaatgacttataattccaagtgacatgtacagatgctatagctgcctacata 408
Query: 121 tacatttttacaagaggcaagaattgaagtaaaaatgagaaaaaatttaagaaaataaaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 407 tacatttttacaagaggcaagaattgaagtgaaaatgagaaaaaatttaagaaaataaaa 348
Query: 181 agaccaccatttaaagaactgctttctcgggatatcagcctgaagactcagttcttttag 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 347 agaccaccatttaaagaactgctttctcgggaaatcagcctgaagactcagttcttttag 288
Query: 241 atgatgtattgaaaaagtcaaacgcttacatgttatgataatgaataaatgtggatttaa 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 287 atgatgtattgaaaaagtcaaacgcttacatgttatgataataaataaatgtggatttaa 228
Query: 301 atggtataagaatatatatata----------tatattcttttttttatttattacgtat 350
|||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 227 atggtataagaatatatatatacatatatatatatattcttttttt-atttattacgtat 169
Query: 351 tttcctcaatgacatttccaatgctatcccaaaagtcccccataccctccccccccactt 410
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 168 tttcttcaatgacatttccaatgctatcccaaaagtcccccataccctccccccc-actt 110
Query: 411 ccctacccacccattctcatttttttagccctggcgttcccctgtactggggcatataaa 470
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 109 ccctacccacccattctcatttttttggccctggcgttcccctgtactggggcatataaa 50
Query: 471 gtttgtgtgtctgatgggcctctctttccagtgatggccgactaggcca 519
||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 49 gtttgtgtgtccgatgggcctctctttccagtgatggcttactaggcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_n14.g1 MSMg01no111_n14.g1 CHROMAT_FILE:
MSMg01no111_n14.g1 PHD_FILE: MSMg01no111_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:41 2005
(325 letters)
>mm_chr7_98688722_98689448
Length = 727
Score = 553 bits (286), Expect = e-162
Identities = 317/328 (96%), Gaps = 6/328 (1%)
Strand = Plus / Plus
Query: 1 gtaaaataaataaaagcaaagtaagtaaataaa-tagttaaatactaaaggtcttgtctg 59
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 201 gtaaaataaataaaagcaaagtaagtaaataaaatagttaaatattaaaggtcttgtctg 260
Query: 60 ttcttgtttccatgatt--aaaaaaaatcaaatttataggaaaaaaatgcaaacatggtt 117
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 ttcttgtttccatgattttaaaaaaaatcaaatttataggaaaaaa-tgcaaacatggtt 319
Query: 118 gtaaaacctattagtccccacagaacacatgacaatcctttgctttgcctcatggcacct 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtaaaacctattagtccccacagaacacatgacaatcctttgctttgcctcatggcacct 379
Query: 178 gtcaatggattggaatttagtagctcttctagctctccattgcatgattcc-gtcttaaa 236
|||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 380 gtcaatggcttggaatttagtagctcttctagctctccattgcgtgat-cctgtcttaaa 438
Query: 237 atattacagaagagactttttacttattaatttcaggtttatattctccttttggccttt 296
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 439 atattacagaagagactttttacttattaatttcaggtggatattctccttttggccttt 498
Query: 297 aatatcctgtgctttatcttcttactaa 324
||||||||||||||||||||||||||||
Sbjct: 499 aatatcctgtgctttatcttcttactaa 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 727
Length adjustment: 9
Effective length of query: 316
Effective length of database: 718
Effective search space: 226888
Effective search space used: 226888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
