BAC Information

Click to search

BAC

Clone NameMSMg01-112H13
Chromosome7 (Build37)
Map Location 116,226,356 - 116,226,801
singlet/doubletsinglet
Overlap geneRic3
Upstream geneLOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508, Olfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub
Downstream geneLmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112H13.T7 (MSMg01no112_h13.b1)MSMg01-112H13.TJ (MSMg01no112_h13.g1)
ACCAG324874AG324875
length719735
length of high quality
(start - end)
448 (46 - 493)397 (77 - 473)
definitionCHROMAT_FILE: MSMg01no112_h13.b1 PHD_FILE: MSMg01no112_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:38 2005CHROMAT_FILE: MSMg01no112_h13.g1 PHD_FILE: MSMg01no112_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTAAGCTACCAAGTTGGCCTTGGACTTAGTGATCCTCCTGACTC
TAGAATGATAAAATTATAGGCGTGCACCACCCCAGATCAAGTTGTACTCT
AAGAGGCAACAAGAGGCTGAACAAGTGAACGCCCAAAACCATGATAAAGC
TCCACTACCAACTAAGATTCCTACAGATACATGGTAGAAAGGGGAAACCT
ACTAACTCTAAGTTCAGGCACAGGTGACAAGACGACACGCAAGTCACTGA
GGGGAAGAGTGGGGGCCGGGGAGGCCACGACCGCCTGCGAGCTCCGAGGC
TGCCCAGTCGGCGCTCACCTTCTGGGCCCGGCGGCGGCTCCGGTCGCTTC
CCGCGAGACAAGAAGGCCTTGGGCAGCAGCAGCGACACGGCCAGGACGAG
CCCCGAGGCCAGCGCCACTCTCTGCACCGTGGAGTACGCCATGGCTGCGT
ACCGCAGGACCCAGGAGTCCGAACCGGAACCGGAACCGCAGCGCGCAATC
CGGCTCACACTCGACCGGTGAGCTGCACGGACGGTGTCGCGCGAGGGACA
AGACGAGAGCGCCCTCCACTCTGTCAAAGTGCCCCAGGGCGGCGCGTCTG
CAACGCTACAGCAAAGCTTCTATCCCCTAGCTCGCTTGCGTTCAGCTGTC
ATCCATGTCCGGCCATCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTAT
ATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TTCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAAGTCTCGATCTTA
CAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATA
TCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAG
ATAAGTATAACCATGGCTACATGGCATTCTGCAGGTAGAGGTGTGCTTTT
TTTCCTCTCCCCTCTTTTTCTCCCCCGCCCGTTTTCCCCCGCTTCCCTTC
CCCCTTTTTCTTCTTTCCCCCTTTCTTCCTCTTTTCTTTCCTCCTCGTTC
CCCTTTTTTTCCTCCGTGTCTCCTTCACTTTTTCTTTATTCTCCCTACCC
TTCTTCTCTTTCCTTCCTCTTATTTTTCCTTTCTCCCTCGCTCCGCTCTC
TCTCTTTTTTTTTTTTCCCACCCCTTTTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_h13.b1 MSMg01no112_h13.b1 CHROMAT_FILE:
MSMg01no112_h13.b1 PHD_FILE: MSMg01no112_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:38 2005
         (448 letters)



>mm_chr7_116226154_116227001
          Length = 848

 Score =  816 bits (422), Expect = 0.0
 Identities = 440/446 (98%), Gaps = 1/446 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaagct-accaagttggccttggacttagtgatcctcctgactctagaatg 62
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcattaagcagaacaagttggccttggacttagtgatcctcctgactctagaatg 262

                                                                       
Query: 63  ataaaattataggcgtgcaccaccccagatcaagttgtactctaagaggcaacaagaggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ataaaattataggcgtgcaccaccccagatcaagttgtactctaagaggcaacaagaggc 322

                                                                       
Query: 123 tgaacaagtgaacgcccaaaaccatgataaagctccactaccaactaagattcctacaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaacaagtgaacgcccaaaaccatgataaagctccactaccaactaagattcctacaga 382

                                                                       
Query: 183 tacatggtagaaaggggaaacctactaactctaagttcaggcacaggtgacaagacgaca 242
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgcatggtagaaaggggaaacctactaactctaagttcaggcacaggtgacaagacgaca 442

                                                                       
Query: 243 cgcaagtcactgaggggaagagtgggggccggggaggccacgaccgcctgcgagctccga 302
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 cgcaagtcactgaggggaagagtgggggccggggaggccacgaccgcccgcgagctccga 502

                                                                       
Query: 303 ggctgcccagtcggcgctcaccttctgggcccggcggcggctccggtcgcttcccgcgag 362
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 ggctgcccagtcggcgctcaccttccgggcccggcggcggctccggtcgcttcccgcgag 562

                                                                       
Query: 363 acaagaaggccttgggcagcagcagcgacacggccaggacgagccccgaggccagcgcca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acaagaaggccttgggcagcagcagcgacacggccaggacgagccccgaggccagcgcca 622

                                     
Query: 423 ctctctgcaccgtggagtacgccatg 448
           ||||||||||||||||||||||||||
Sbjct: 623 ctctctgcaccgtggagtacgccatg 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)