Query= MSMg01no112_n02.b1 MSMg01no112_n02.b1 CHROMAT_FILE:
MSMg01no112_n02.b1 PHD_FILE: MSMg01no112_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:05 2005
(614 letters)
>mm_chr7_86101904_86102917
Length = 1014
Score = 1087 bits (562), Expect = 0.0
Identities = 595/606 (98%)
Strand = Plus / Minus
Query: 4 ggaattcataaaaattgtcttcatgactaacatatgaacaaagttcatctcaatgttttt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaattcataaaaattgtcttcatgactaacatatgaacaaagttcatctcaatgttttt 547
Query: 64 gcctggcatcaaaaaagaaagcaggtctagaagggaggaccttggctgggtctatgtgaa 123
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 546 gcctggcatcaaaaaagaaaccagatctagaagggaggaccttggctgggtctatgtgaa 487
Query: 124 gaaaaagaagacacctgggttggaagcaatgggaggagagccatgtggaaacacatggct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaaaaagaagacacctgggttggaagcaatgggaggagagccatgtggaaacacatggct 427
Query: 184 tgcatctggagcttgggagaaggatccttgtccccgtgggcatgtagattagaaaatgaa 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 426 tgcatctggagcttgggagaaggatccttgtccctgtgggcatgtagattagaaaatgaa 367
Query: 244 aatgatatctcaggaagatgacaacagaagggggttctatggagggatccctccacaaag 303
|| |||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct: 366 aaggatatctcaggaagatgacagcaggagggggttctatggaggggtccctccacaaag 307
Query: 304 gagggccactgcagacagatgaggacacaggaagctcaagagggacagattaaatgacac 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gagggccaccgcagacagatgaggacacaggaagctcaagagggacagattaaatgacac 247
Query: 364 atacagcttcctctcccctcggagccaaggaaggctcttctgctttttcttttaatcagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atacagcttcctctcccctcggagccaaggaaggctcttctgctttttcttttaatcagc 187
Query: 424 acatacttgttgtaactcttgctgggctacggtgtgatcgttccatacatgtaaacagtg 483
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 acatactcgttgtaactcttgctgggctacggtgtgatcgttccatacatgtaaacagtg 127
Query: 484 tgccatgctcagatcaggaagaatagtattttcatctctgtaaatacctctaagagtcag 543
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 126 tgccatgctcagatcaggatgaatagtattttcatctctgtaaatacctctaagagccag 67
Query: 544 gtggtgtgctgggtgtggtggcacacgcctttatcccagcacttgggaggcagaggcagg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gtggtgtgctgggtgtggtggcacacgcctttatcccagcacttgggaggcagaggcagg 7
Query: 604 tggatc 609
||||||
Sbjct: 6 tggatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_n02.g1 MSMg01no112_n02.g1 CHROMAT_FILE:
MSMg01no112_n02.g1 PHD_FILE: MSMg01no112_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:05 2005
(588 letters)
>mm_chr7_86072663_86073650
Length = 988
Score = 1013 bits (524), Expect = 0.0
Identities = 560/588 (95%), Gaps = 25/588 (4%)
Strand = Plus / Plus
Query: 1 agtatctgagagaaaatgaagacaacacaagaacacaactcttttcttgcctccaagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 agtatctgagagaaaatgaagacaacacaagaacacaactcttttcttgcctccaagggg 285
Query: 61 ataagaggtagtttattctagagccaaatatgaatggccacggccttgggaacacagatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ataagaggtagtttattctagagccaaatatgaatggccacggccttgggaacacagatg 345
Query: 121 caggttacaccaaggtccattctctaatgtgctggcagtttcttgacatttttatagcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caggttacaccaaggtccattctctaatgtgctggcagtttcttgacatttttatagcaa 405
Query: 181 cgaaggaaacaaagaaacaaaggaaagaaacaaaggaagccatcaagaactttgaagaca 240
| ||||||||||||||||||||||||||||||||||
Sbjct: 406 c-------------------------gaaacaaaggaagccatcaagaactttgaagaca 440
Query: 241 tcaggcaggcacattcatgggcctctgaacgatgaaatctagtggtctgtttatacatgc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tcaggcaggcacattcatgggcctctgaacgatgaaatcttgtggtctgtttatacatgc 500
Query: 301 caatttttacctaatgctcacaaagatgtcaggtctcctccagatgtgggcaataatacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 caatttttacctaatgctcacaaagatgtcaggtctcctccagatgtgggcaataatgcc 560
Query: 361 ttctaagggagctagacagtccaagttaaattgcaattaggctctggaccttcaaccttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctaagggagctagacagtccaagttaaattgcaattaggctctggaccttcaaccttg 620
Query: 421 gcatctcaatctctccacagcgggtgaagatggaatttccttacctctaaggaagcttca 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatctcaatctctccacagcgggtcaagatggaatttccttacctctaaggaagcttca 680
Query: 481 gtgtaacatgacgtccttcccaggaactttctcattcatagaaaggaagaaaaattcccg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtaacatgacgtccttcccaggaactttctcattcatagaaaggaagaaaaattcccg 740
Query: 541 gaactggggacagttcaccaagattagacacagggcttgagaagtgct 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaactggggacagttcaccaagattagacacagggcttgagaagtgct 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
