BAC Information

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BAC

Clone NameMSMg01-112O03
Chromosome7 (Build37)
Map Location 58,448,592 - 58,448,877
singlet/doubletsinglet
Overlap genenone
Upstream geneNell1, 4933405O20Rik, EG668766, EG668767, EG668768, EG638046, EG668770, EG668774, LOC668776, LOC434186, LOC546971
Downstream geneLOC668779, Tmem16e, Slc17a6, EG620599, LOC654473, LOC100040608, Gas2, 1700015G11Rik, EG668783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112O03.T7 (MSMg01no112_o03.b1)MSMg01-112O03.TJ (MSMg01no112_o03.g1)
ACCAG325176AG325177
length717752
length of high quality
(start - end)
289 (62 - 350)179 (76 - 254)
definitionCHROMAT_FILE: MSMg01no112_o03.b1 PHD_FILE: MSMg01no112_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:09 2005CHROMAT_FILE: MSMg01no112_o03.g1 PHD_FILE: MSMg01no112_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCTTCCCTGAGCCCCATTGGTTTTAAAGGCAATGGATTATCTGCCTTGAG
TTAAACAGACTTTACATTTTAATTGTGTGTCCAAGTACATTCAATGATGA
AATGTTCTCTCTTCAAAGTACCAACAAATTATTTTCTTGCTTCTGATGGT
AAAGGATAATAGAGCAAAGAGAAACATGCACTATTAGAGAATTGTCTTCT
CTTTTAGAAGCTGAATCTTGCCCTTCTGCATTTCTTCCCTCCCTGTCTTC
ATTCCTATCTCTTGTGGTTCTCCCTCCCCCTTTCCTTCTTCCCTTTGTGA
CTTCTTCCCATGCGCCATTTTGCCAGCTTCACTCTCTAGATCTTATTCTT
TTATTCACCACCTTGATTTCACGAAACTAACCCAGAGAATTTTTACACTT
TCAAACTGATGGTCTAAGAACCGGCTTTACTTCTAAGCTGGTAGGTTTTG
CATGCGAATGATTAAACATCCTGTGACTAGGTTTCACGAATCCCGATTTT
TTTCAATTATCCTTGCCATTCTCTCATCACCTTTCTTGTCTTGTATTTTT
GCTTTGTTCGCTTCCCTATATATTCGATGTTTTCTATCCCCACTTTATTG
TTTTCCCCGCATTTTCTTCCTTTCCCCCTGACCCTCCTAATTTTCCTTTT
TCTCTGCCTCTCCGCCC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAATGTCACAGCTGTCATGTGCA
GAAGACAGCATCTCACAGTTCTCTCTCCCATCTTCTGGCTCCAGTTTGGG
TCATTTCTTGAGCTTTATCCTTTGGGGAAATTTTAAGATATCTCATTTAA
GCTGAGCACACTGTCTATCTCGGCATCCCAACAAGTTCTCTATCTCTCCA
GTGACTCCTGCTCACTTTAGAAAGAAGCAACTTCACTGTGATTGAGAACA
GCTAAGGTCTACGGCTATGACCAATTTAATGATGTCAGGTTCTACTCTAG
GGCCTGAGACCTCTGCAACCATGGGCTTTTGACCAGAATTAAAGTATCAG
GAAAGAAATTTCCTCCAGTGCTCAAGTCCTCAAGTCCTCGCGTGAGTGTG
TACCTTTCAAACTACGAGTAACTCATATACTCGTGAGTACCTCATACCTT
CTTCAAGAACCAGGCGGAATCAGTAAATGCCTAGTGAGAATCATAGAGTG
TTATTCAATACCCTAAGATCTACTAGTCCTGTTTCATTTATATTCAACAT
CCTGTTCAATAGTTAACTTGCCCACGAAACAATCATGCAGGCACCACTTA
TATTGCGCCTACGAACTATTGGTGGGAGAACATGTTGTTGCAAAAGCCTT
ATCCTAGTGCCAATCCTTTACCCAGATCATGACTTGCCCTGCGTTTTTTG
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_o03.b1 MSMg01no112_o03.b1 CHROMAT_FILE:
MSMg01no112_o03.b1 PHD_FILE: MSMg01no112_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:09 2005
         (289 letters)



>mm_chr7_58448389_58449077
          Length = 689

 Score =  493 bits (255), Expect = e-144
 Identities = 279/287 (97%), Gaps = 2/287 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   cattggttttaaaggcaatggattatctgccttgagttaaacagactttacattttaatt 63
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 cattggttttaaaggcaatggattatctgccttgagttaaacagactttatattttaatt 263

                                                                       
Query: 64  gtgtgtccaagtacattcaatgatgaaatgttctctcttcaaagtaccaacaaattattt 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtgtccaagtacattctatgatgaaatgttctctcttcaaagtaccaacaaattattt 323

                                                                       
Query: 124 tcttgcttctgatggtaaaggataatagagcaaagagaaacatgcactattagagaattg 183
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 324 tcttgtttctgatggtaaaggataagagagcaaagagaaacatgcactattagagaattt 383

                                                                       
Query: 184 tcttctcttttagaagctgaatcttgcccttctgcatttcttccctccctgtcttcattc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttctcttttagaagctgaatcttgcccttctgcatttcttccctccctgtcttcattc 443

                                                          
Query: 244 ctatctcttgtggttctccctccccctttcct-tcttccctttgtga 289
           ||||||| |||||||||||||||||||||| | ||||||||||||||
Sbjct: 444 ctatctcctgtggttctccctccccctttc-tgtcttccctttgtga 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)