BAC Information

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BAC

Clone NameMSMg01-113A22
Chromosome7 (Build37)
Map Location 122,124,838 - 122,125,165
singlet/doubletsinglet
Overlap genenone
Upstream geneSpon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca, LOC100043295, Calcb, Insc, EG627967
Downstream geneLOC668472, Sox6, LOC100042779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113A22.T7 (MSMg01no113_a22.b1)MSMg01-113A22.TJ (MSMg01no113_a22.g1)
ACCAG325301AG325302
length713709
length of high quality
(start - end)
114 (62 - 175)328 (69 - 396)
definitionCHROMAT_FILE: MSMg01no113_a22.b1 PHD_FILE: MSMg01no113_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:23 2005CHROMAT_FILE: MSMg01no113_a22.g1 PHD_FILE: MSMg01no113_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTC
ACATCCTACCGAACGGAGAATTATGCCACACATAGAACACAGTCTGTTCA
CTCGTATCTCTGCAGGCCTTGCATCAAGCTTGAACATCATGCATCCCACA
TAGCCACTTCTTGCAATTTTTCAAAACGTGTTTGTGTGCACCCTCTCAGA
GAGGAGGCTGCAAGTGGGAGTTCTCATCTGTACTTCCTGGAGAGGAATAT
AATAGAAATTCAACACTCGTCAGTGTGCCACTTTGAATCATTGAATTCTG
CAGGCAAGTCGATCTTGAATCCTAGTCTCACACAGGAGTCTACACCTCTA
CCCTAGCTACAGAACAACAACAACAAACAACAACAACAACAACAACTACA
ACAACAACAGGACATTGAGATTTCTGTGCAGAGCAAATGTTAAATGAGCT
TCTTTCCAGAGAGACCAGCTTGGAGTACATGCTTACTGTTGGAACGTGAA
CGAAGCGCTCTTATATACTAGCCCAGCCCACTTAGAAAAACCACCAAAAG
CCCCAGAGCACGCCATAAGGACTCTTCCTCGCACGTGAATGTCGGTCCTA
TTTGGGCGAGTACACGCATGGTTGAGTTCCTCCTCCCCCTTCTCAGTTTT
TTGGGGGTGTCAAAACCTACCACCCTGCGTCCCTATCTATTTCGTTTTTG
CCCTTTTAATGGT
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTAGATACATCAAAACTGCTATTCAAAATGAGG
GTAATATGCAAATACTGTAAGAAGGAATTAAGGCAGATTTTTCCATAAGT
GTTAACAGCCTCTTAATGTAGACTCTAGTGAAGACCAGTAATATGGCTTA
GTGGATGAAGGTGCCTGTAGCCAAGACCCATGACCTAAGTTCAATTCCTA
GGACCCACTTGACCGAAGGAGAGAACTGGTTTTTCTGAAGTATTTTTTGA
CCTCCACATGAGTCTGTGTTCTGCTGCAATACCCCCCAGATTCATACAAA
ATAAATAAATATTACACAAATAAATATTAAACTCTGTTTACAAAGACCTG
GTGAACAATGAACTCTAGGAAGAGGGAAATATAGCTAATATAACAGTATG
CAGTCACCATGATTTCTGTTACTGATATAAATTGAAATTTTTACCTATAG
AGGTGAGGATGGGAGTAAATGGTATCTCATCATATCATGTAGCGACAGTG
TTGTTGTGTGGTAGGGGTCAGTCCACAGTCATCCCAGCCTGTGGGTCTTA
TAGCTCAACTGGTGCCAAGGTTTTGACATTTTCAGCTATCCCTCTATTAC
CTTAGGTTTTAGGAAACTTCCCTCTTTTTTCTTAAGCCCCACTGTTCTTT
TTCCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_a22.g1 MSMg01no113_a22.g1 CHROMAT_FILE:
MSMg01no113_a22.g1 PHD_FILE: MSMg01no113_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:23 2005
         (328 letters)



>mm_chr7_122124638_122125365
          Length = 728

 Score =  596 bits (308), Expect = e-175
 Identities = 323/328 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagatacatcaaaactgctattcaaaatgagggtaatatgcaaatactgtaagaaggaat 60
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 201 tagatacatcaaaactgctattcaaaatgagggcaatatgcaaatattgtaagaaggaat 260

                                                                       
Query: 61  taaggcagatttttccataagtgttaacagcctcttaatgtagactctagtgaagaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggcagatttttccataagtgttaacagcctcttaatgtagactctagtgaagaccag 320

                                                                       
Query: 121 taatatggcttagtggatgaaggtgcctgtagccaagacccatgacctaagttcaattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatatggcttagtggatgaaggtgcctgtagccaagacccatgacctaagttcaattcc 380

                                                                       
Query: 181 taggacccacttgaccgaaggagagaactggtttttctgaagtattttttgacctccaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taggacccacttgaccgaaggagagaactggtttttctgaagtattttttgacctccaca 440

                                                                       
Query: 241 tgagtctgtgttctgctgcaataccccccagattcatacaaaataaataaatattacaca 300
           |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 441 tgagtcagtgttctgctgcaataccccccagattcatacaaaataaatcaatattaaaca 500

                                       
Query: 301 aataaatattaaactctgtttacaaaga 328
           ||||||||||||||||||||||||||||
Sbjct: 501 aataaatattaaactctgtttacaaaga 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)