BAC Information

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BAC

Clone NameMSMg01-113C05
Chromosome7 (Build37)
Map Location 140,144,528 - 140,144,715
singlet/doubletsinglet
Overlap geneZranb1
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik
Downstream geneCtbp2, LOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113C05.T7 (MSMg01no113_c05.b1)MSMg01-113C05.TJ (MSMg01no113_c05.g1)
ACCAG325361AG325362
length712704
length of high quality
(start - end)
57 (56 - 112)190 (105 - 294)
definitionCHROMAT_FILE: MSMg01no113_c05.b1 PHD_FILE: MSMg01no113_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:29 2005CHROMAT_FILE: MSMg01no113_c05.g1 PHD_FILE: MSMg01no113_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCGCTATACGACTCCTATTCCGAGAGGTCCGCGGATTCTATGTT
GTCCGCGTTAATAGGTGTTCTCCACAGTGTAAATAAACTTTGCGTTTATT
AGATGGGAGCTGGTATGTTGGCTGAAATCTTGATTTCCCATTCCAGTTTA
TCCTGCCATTGTCTGTATTGGTCACTATTACTGCACAGTTTAAACCGATA
AACCAACTTATATCAACGCATAACTTCATATTCGCGAGGCGAAATTATAT
CACAGATTATATGAGCAAGCGACGGGGTATGTCTAGCATCTTCACAGCAT
TTANGGTCATCGCGGGAGTGTCTACGACGCCGGGACATCAACTCCTTCCG
NACCCCGGGAGGCGGGGACCCACGGACACGCTNGGTCGTCGACAAGGGGC
TCACACGACCGGGGACTTTTCCACAAGACGGGGTTCCCGTGCACCAACCG
GTCGGGTGATTAACCACCACTTTGGGTCCCAACCTTGTTTGGGGTGTCGT
TGTGGTTACCACCAACCACACATCGTAGGTTGGGGTGGAGGGGGGGGGGG
AATTATCTTTCCGCCTAATCANGTNTTTTTGGGTNTTGCGGTTTACGACG
GTATTCTTTTTGTTGGTTGGGGGGTCCTGATGCCCCTTTTCATCTTCCGC
CGATTTCTGGGGCCCACCGGGGGGGAGTGTTTTGCAGTAATTGGTACACT
ATATGGGGTTAN
GTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAAAGAATTAGCAATATGCGGAATAGGGTAGAAG
TTAGTATAAAGAAGGAAGAATAGTAATAAAGACATGAAATACTAGCAGCC
ATAAAGACAAATATGCTGACTGGTCTACCTGGGACTTTCAGAGCGGGAAA
AAATTTAAAGCATTTCTTATCCTAGGATTGTCTGACTTAAGATACCAAAG
ACCCTTGATTCCTAAAAGAATTCTATCCCCTTCCAAAAAGGTGAAGAAGT
TAGGTGATTTCTTCTGGAAACTTATGGATACTATTTGGGTGGTAACCATA
TGGTGAATATACAGATAGGGCACGGCCACTGCAAATGGGATTGACATAGA
AGACACTACCACAGCAAATGGAATATTAACGAGCACAAACACAAACAAAG
AACAAAAACACACAAGAACCACAAAACCGCAAACAAGACACAAATACAAC
TCACGCAGCCGAAATCCCAAAAAGATCGTAACGCAACAACAAGAAACCAG
ACAAACCTACCATATCCTTAAGCGGGGGCAGATGAAGGGGATGCAGGTTG
GACGGAGGAGTGAAAACTTTGGTGGGCTGGGGGGAACATGCGGGATTGGG
AGGAAACAGAACCACAGAAACCAAGAGCACAAAAAAAGAACAAAAAAGGG
AAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_c05.g1 MSMg01no113_c05.g1 CHROMAT_FILE:
MSMg01no113_c05.g1 PHD_FILE: MSMg01no113_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:29 2005
         (190 letters)



>mm_chr7_140144328_140144917
          Length = 590

 Score =  335 bits (173), Expect = 1e-96
 Identities = 185/189 (97%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaagaaggaagaatagtaataaagacatgaaatactagcagccataaagacaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tataaagaaggaagaatagtaataaagacatgaaatactagcagccataaagacaaatat 329

                                                                       
Query: 61  gctgactggtctacctgggactttcagagcggg-aaaaaatttaaagcatttcttatcct 119
           |||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 328 gctgactggtctacctggtactttcagag-gggaaaaaaatttaaagcatttcttatcct 270

                                                                       
Query: 120 aggattgtctgacttaagataccaaagacccttgattcctaaaagaattctatccccttc 179
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 269 aggattgtctgacttaagataccaaaaacccttgattcctaaaagaattctatccccttc 210

                    
Query: 180 caaaaaggt 188
           |||||||||
Sbjct: 209 caaaaaggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)