Query= MSMg01no113_f02.b1 MSMg01no113_f02.b1 CHROMAT_FILE:
MSMg01no113_f02.b1 PHD_FILE: MSMg01no113_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:42 2005
(558 letters)
>mm_chr7_57057012_57057969
Length = 958
Score = 1042 bits (539), Expect = 0.0
Identities = 551/555 (99%), Gaps = 2/555 (0%)
Strand = Plus / Minus
Query: 5 ggaattcacaat-acaccgagtgacatttgaaagtggtgacaagtgtcctagaaatcaca 63
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ggaattcacaatca-agtgagtgacatttgaaagtggtgacaagtgtcctagaaatcaca 700
Query: 64 gaaaagaacacaggtatgtcagcaaaagctcaaagtgacaatgtaagaatactcaaatcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 gaaaagaacacaggtatgtcagcaaaagctcaaagtgacaatgtaagaatactcaaatcc 640
Query: 124 gtacagaactcttgggctttcaattcagtgtccaaaccacatatttcttcatctttgttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gtacagaactcttgggctttcaattcagtgtccaaaccacatatttcttcatctttgttg 580
Query: 184 tccaaacatattgaaatgataataaattaaaactgtaatataaaagcagaaatattatga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tccaaacatattgaaatgataataaattaaaactgtaatataaaagcagaaatattatga 520
Query: 244 ggtatcagaccagagattctggtaatttggtacgagagaataaagagcgaatcagatcag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggtatcagaccagagattctggtaatttggtacgagagaataaagagcgaatcagatcag 460
Query: 304 caaatcggttatgcaggacccagcacccaagtgcacagcacactgaataaagccattctt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caaatcggttatgcaggacccagcacccaagtgcacagcacactgaataaagccattctt 400
Query: 364 cacaacacaaacctcagaggggagcacagaggtgcacagggtgggagtgccagaggggct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cacaacacaaacctcagaggggagcacagaggtgcacagggtgggagtgccagaggggct 340
Query: 424 gaaacaggactacatgaatgatgtactaaccaggactccttcttcaccccagaccccaga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gaaacaggactacatgaatgatgtactaaccaggactccttcttcaccccagaccccaga 280
Query: 484 ccccccagaccaccagtttccttaccatagacacataatcaattaaaaccaaatactcta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccccccagaccaccagtttccttaccatagacacataatcaattaaaaccaaatactcta 220
Query: 544 tggtagataaagaag 558
|||||||||||||||
Sbjct: 219 tggtagataaagaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_f02.g1 MSMg01no113_f02.g1 CHROMAT_FILE:
MSMg01no113_f02.g1 PHD_FILE: MSMg01no113_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:42 2005
(543 letters)
>mm_chr7_56860708_56861650
Length = 943
Score = 1019 bits (527), Expect = 0.0
Identities = 539/543 (99%)
Strand = Plus / Plus
Query: 1 aacgctgctatcctgcccagggtctgaagggaatgccggatccagtagacatttctcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgctgctatcctgcccagggtctgaagggaatgccggatccagtagacatttctcaag 260
Query: 61 gccaaggtcatgtgggtcttactgaggctagcaaggtcattgcgtcatccgtcctgagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccaaggtcatgtgggtcttactgaggctagcaaggtcattgcgtcatccgtcctgagat 320
Query: 121 ctggactgactgggggtattcgataatgagtaaccctctctgctgcagagaattaactgc 180
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 321 ctggactgactgggggtattcgatagtgagtagccctctctgctgcagagaattaactgc 380
Query: 181 tgtatggctgccagaggaggttaggaggttaggcttgggttctttctccacttgaggtaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatggctgccagaggaggttaggaggttaggcttgggttctttctccacttgaggtaa 440
Query: 241 aggtggcaggcaacagctcacactctgtcttagttagggtttcacggttgtgaacagaca 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aggtggcaggcaacagctcacactctgtcttagttagggtttcacggctgtgaacagaca 500
Query: 301 ccatgaccaaggcaactcttaggacagcatttagttggggctgccttacaggtttagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgaccaaggcaactcttaggacagcatttagttggggctgccttacaggtttagaag 560
Query: 361 ctcagtccagtatcctcaaggtgggagcttgacagcatctaggcaggcatggtgcaggag 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagtccagtatcctcaaggtgggagcttgacagcatctaggcaggcatggtgcaggag 620
Query: 421 aaactgagagttccacatcttcatctgcaggctgttaggagagtactgacttccaggcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactgagagttccacatcttcatctgcaggctgttaggagagtactgacttccaggcag 680
Query: 481 ctaggaagaggttcttaaagcccacacccacagcgacacacctactccaaggccacatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaggaagaggttcttaaagcccacacccacagcgacacacctactccaaggccacatct 740
Query: 541 tca 543
|||
Sbjct: 741 tca 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
