BAC Information

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BAC

Clone NameMSMg01-113M17
Chromosome7 (Build37)
Map Location 100,827,650 - 100,827,944
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298, LOC666783
Downstream geneEG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113M17.T7 (MSMg01no113_m17.b1)MSMg01-113M17.TJ (MSMg01no113_m17.g1)
ACCAG325839AG325840
length699706
length of high quality
(start - end)
490 (64 - 553)295 (65 - 359)
definitionCHROMAT_FILE: MSMg01no113_m17.b1 PHD_FILE: MSMg01no113_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:20 2005CHROMAT_FILE: MSMg01no113_m17.g1 PHD_FILE: MSMg01no113_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAACGACTCCTATTCAAGAGGAGCGCGGATTCTACCT
TACCATATCAATGGCTGAGAAGACCTGAAAAAATGTTCAACATCCTTAAT
CATCAGGGAAATGCAAATCAAAACAACCCTTAGATCCCACCTCACACCAG
TCAGAATCGGTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGA
TGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGT
ACAACCACTCTGGAAATCAGTCTGACGGTTCCTCAGAAAATTGGACATAG
TACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGAT
GTCCTAACCGGTAAGAAGGACACATGCTCCACTATTTTCATAGCAGCCTT
ATTTATAATAACCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGG
AATGGATACAGAAAATGTGGTACATTTACGCAATGGAGTACTACTCAGCT
ATTAAAAAGAACGCATTTAAGAAATTCCTACGCAAATGGATGGACTTGGA
GGCCATCATCCTGAGTGAGGTAACCCAGTCACAAAAGAATTCACACAATA
TGTACTCACTGATAAGCGGATATTAGCCCAGAAACCTCGAATACCCAGGA
GATAAGATACAATTTGCTCCACACATAATACTCAAGTACAATGAAGACC
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCATTTTCAATCTCAGGAACTGTCAAATTCATTGAGG
TTAAAAATCTTAATACTGTAGTCAGAAAGTTTTGAGTTAAAATTCTGCAC
ATTTGCTTTTGTCCTCATTAATGCCTTCCTGGCCTATAGCCTAAATAAGA
AGGTAAATAAAGTCATAAGGATTGAGAAACTGGGCTGAGACAAAGATGGT
GGTATGGGAAGGAAGACAAGGGCTTATAGAAAGACATCCATTTCACTCAA
TAGGATATTCTTCCTATGAAAGATACTACTTGAGAACTATGTCTTACTGA
TAGAAAATGAAGACAACTATATATTCACTGCTGTTGACATCAGAAACTAC
AGTACGCAACTATAACAAGAAGAATCAGCTTTTGTATTTCAAATCCTATT
TTGCTGATCTGTTTAAAAATATTTTGTTAACATCATAGTGAGTCCTATTT
TGTGCCCACAACTGACGCTCACCAGATTGGCTATTGAAGTCTAGAACCCA
TTGAGAGTGGAGCATTCTGGACACTGTATTCCAATTAGAACTGCGCTTTC
CTCCCTGGCATTCACAATGCCATTGATCCACTCACTTAATCTGCCACAAC
CAATGTGCAAACCTCCCTTCGCATAACCCCTGAACGGGACTATGCACCAC
TGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_m17.g1 MSMg01no113_m17.g1 CHROMAT_FILE:
MSMg01no113_m17.g1 PHD_FILE: MSMg01no113_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:20 2005
         (295 letters)



>mm_chr7_100827450_100828144
          Length = 695

 Score =  540 bits (279), Expect = e-158
 Identities = 291/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattttcaatctcaggaactgtcaaattcattgaggttaaaaatcttaatactgtagtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cattttcaatctcaggaactgtcaaattcattgaggttaaaaatcttaatactgtagtca 436

                                                                       
Query: 61  gaaagttttgagttaaaattctgcacatttgcttttgtcctcattaatgccttcctggcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 435 gaaagttttgagttaaaattctgcacatttgcttttgtcctcattaatgccttcctggtc 376

                                                                       
Query: 121 tatagcctaaataagaaggtaaataaagtcataaggattgagaaactgggctgagacaaa 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 375 tatagcctaaataagaaggtaaataaagtcataaggtttgagaaactgggctgagacaaa 316

                                                                       
Query: 181 gatggtggtatgggaaggaagacaagggcttatagaaagacatccatttcactcaatagg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 315 gatggtggtatgggaaggaagacaagggcttatagaaagacatcaatttcactcaatagg 256

                                                                  
Query: 241 atattcttcctatgaaagatactacttgagaactatgtcttactgatagaaaatg 295
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 atattcttccaatgaaagatactacttgagaactatgtcttactgatagaaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)