Query= MSMg01no114_a19.b1 MSMg01no114_a19.b1 CHROMAT_FILE:
MSMg01no114_a19.b1 PHD_FILE: MSMg01no114_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:39 2005
(433 letters)
>mm_chr7_12564489_12565322
Length = 834
Score = 801 bits (414), Expect = 0.0
Identities = 426/430 (99%), Gaps = 1/430 (0%)
Strand = Plus / Minus
Query: 5 gaattcacacaggagagaagccttattcttgctccctgtgtaatagtagcttccgccagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaattcacacaggagagaagccttattcttgctccctgtgtaatagtagcttccgccagt 575
Query: 65 catccacattccaccgtcacttgaggaagttccacaagtcagaatgaactgtggaccttc 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 574 catccacattccaccgtcacttgaggaagttccacaaatcagaatgaactgtggaccttc 515
Query: 125 ctcaccagaggcaagcgtgctttcagcctcagcatgtcatctgcacatgaagcagcatgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctcaccagaggcaagcgtgctttcagcctcagcatgtcatctgcacatgaagcagcatgt 455
Query: 185 agctattcagtaagagttagccggggaagttgtttcatttaacattcagattgcttcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agctattcagtaagagttagccggggaagttgtttcatttaacattcagattgcttcttt 395
Query: 245 ccatgtgttgtcacatgccattggcatgtgagggt-aaaaatgaggcttttgtcagtttg 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 394 ccatgtgttgtcacatgccattggcatgtgagggtaaaaaatgaggcttttgtcagtttg 335
Query: 304 ttcaccaaagtttttcaagtgcctaaatgctgactgttatctgatatcccagcagcaaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 334 ttcaccaaagtttttcaagtgcctaaatgctgactgttatctgatatcccagcagtaaat 275
Query: 364 aaatgttgatggttcagtttctcctgtgtgttatgtttcttgtgtgtttgtgtatcttgc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aaatgttgatggttcagtttctcctgtgtgttatgtttcttgtgtgtttgtgtatcttgt 215
Query: 424 gtgttaatgg 433
||||||||||
Sbjct: 214 gtgttaatgg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 834
Length adjustment: 9
Effective length of query: 424
Effective length of database: 825
Effective search space: 349800
Effective search space used: 349800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_a19.g1 MSMg01no114_a19.g1 CHROMAT_FILE:
MSMg01no114_a19.g1 PHD_FILE: MSMg01no114_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:39 2005
(534 letters)
>mm_chr7_12458776_12459709
Length = 934
Score = 1017 bits (526), Expect = 0.0
Identities = 532/534 (99%)
Strand = Plus / Plus
Query: 1 atgaagctttgagatgggaagattgggcaaggactgagctctgaaagatagtgagcaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaagctttgagatgggaagattgggcaaggactgagctctgaaagatagtgagcaaag 260
Query: 61 gctggcaagagcacacccccagctgcccatggggtctaagagacctatctgagttctgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggcaagagcacacccccagctgcccatggggtctaagagacctatctgagttctgga 320
Query: 121 gagcagagtcagcattcttgggagaggctttggctaggggaaacatacggtgttgggcta 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gagcagagtcagcattcttgggagaggctttggctaggggaaacatagggtgttgggcta 380
Query: 181 tgtgccgagctgagaacaggccgagaccaccgaccagtgcccagcctgtgatagcatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgccgagctgagaacaggccgagaccaccgaccagtgcccagcctgtgatagcatgga 440
Query: 241 ttgttttttaattgttacatgcaacagttgccttcatgtggatcctattctcctaactaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttttttaattgttacatgcaacagttgccttcatgtggatcctattctcctaactaa 500
Query: 301 gctatcttgtctagttgaagtaggagagtatatacccagtcctgtagtgacttgagttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctatcttgtctagttgaagtaggagagtatatacccagtcctgtagtgacttgagttgt 560
Query: 361 cagggtcggttggtattcagtgtgtaccgccccattctcagaggtgaatgagagtgggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagggtcggttggtattcagtgtgtaccgccccattctcagaggtgaatgagagtgggaa 620
Query: 421 tggaggtagggaccatgtgagtggaaattggtggaaagagcaggcaggctttgattggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggaggtagggaccatgtgagtggaaattggtggaaagagcaggcaggctttgattggga 680
Query: 481 tgtaaagtggataaaataagttcattaatggggggggggggttagaagaaccaa 534
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tgtaaagtggataaaataagttcattaatgggggggggggggtagaagaaccaa 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
