BAC Information

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BAC

Clone NameMSMg01-114O11
Chromosome7 (Build37)
Map Location 49,381,804 - 49,382,267
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039269, LOC545955, EG628304, LOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556
Downstream geneEG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114O11.T7 (MSMg01no114_o11.b1)MSMg01-114O11.TJ (MSMg01no114_o11.g1)
ACCAG326670AG326671
length1,045744
length of high quality
(start - end)
---587 (76 - 662)
definitionCHROMAT_FILE: MSMg01no114_o11.b1 PHD_FILE: MSMg01no114_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:42 2005CHROMAT_FILE: MSMg01no114_o11.g1 PHD_FILE: MSMg01no114_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATGTAGTAGGAGTGATTATTATAAGCTCCGCTTTTCAAACATAGAGG
CGATGACGAAGNGAAGAGCATGTGAGTATCACAACAACAACAGTACGCGT
GTAATAGAAGAGGTACACGAAAGGCACACAACAATCCATTATCGAAGTCT
CCACATATCTATATCCATAGTATAACACANATGCACTGCCTCCCCGTCTG
GGTCAATCTCAGGCAATATATTGCGCCGCACGGAGGGTGCGCTGTTCTGC
TNTTCATATCGAGGGCGTTGTGGCGCGTCCGTTTTTGCTGCTACTTATAC
TACAGTCGTAAATCTCTACATTGTTCCTCTTCTACAAATATACCGTATCT
TGAATATTGATTAGTCCACACCACCACCTAGAGCCACTCTATATATTCGA
ACGTAAAACAGATACGACTATAGACTCTACTATAGGAATGATGCAGCGCG
ATAAACGAACACGCGAAGAACCGCGCGTCACCGCCACGCCACGACCAACC
GATGCTAGACAAGCATGATTCCCCCCCCCGCGCGCCTCTCGGCGCCGTGT
TGGACTGTCTCTCATCTCCTCTAATAATCGTCAACATCCCACACTAACAT
GAAATATATGACTATGATAGTGTATATATAATACCCCGTGTTACCACGGC
TATTAAATACTCCGCGCCCGGTCCCTACGCCTCCTCTCTTGTATGTTCAC
GCGACTCTCCTTTAGTCACTGTATTAGGTTATACGCTCGCAGACCACCGG
CATCACCATCACATATTTATTCTCGCATTCTCATTCGCACTGCCGCCCTC
ACACCACACCCGTTCCTCCGCCACCTGCCTGTTTCTCGTCCACCTCGCCT
GATNTTATATGTCCGCGCTTAATGCACATAGTTTTCCGGCCATCCGTCCC
GACTGTATTTCTGTCTATTTTGCGCTTCTAATTTTACTTGATGCCGCACG
TGTATAGCCATGTACTGCGTCTCGCACACTCTGTTTCTACACGTGTGCTT
TCATCTCTTCTCTCCTGCCCTCCCGACTTATCAACCACTTGCTAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAGAGTCAAAACAGTGAAGAAAT
TAACAATCAAATATAGTAACTATCAAATCTCAACAGTAACTTGACTCACA
GTGACATTTCATGCCTATATCCTCCATTGTGATATTTTGTCTTGTTTGAC
CACATATGGTCTTCTATGTGCTTTCATAATGATCATGGGCTCAAATGTGC
AACTCTTGTGGACTGAAAATAATGTTTCCTTTTAGTCATCTACAAGTTCT
GATCTTTAATCTTCACACTCCTTTTTTGCCATGATTGCTCAGTCTTTTAG
GGAGGGGTATGATATCTAACTGATTTATGGATTAGCACCTTATATTCTAT
TATTATATGTACCATGATCAGTCAGAGATTTATGTATTATTTGCGATTTA
CTATAAAAAGAATTTATGAGGAGGGCTGATGGATGCACTAATTTACATCA
ATAAGTCATTAGTGGTTGATTTTGTACTTTAACATAATAAGAGTATTAAA
TTATCCTTGTGTATCTACAACTTAAACTTATCACAGAGTCTTGCCACTTT
TATAGTGCAATGCATGTTTTCTTTTTTTTTAATTAGGTATTTTCCTCATT
TACATTTCCAATGCTGTCCCAAAAGTCCCCATACCTTTCCCACCCCCACC
CCCTTACACACCCACTCCCACTTTTTGGCCCTGGCTTTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_o11.g1 MSMg01no114_o11.g1 CHROMAT_FILE:
MSMg01no114_o11.g1 PHD_FILE: MSMg01no114_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:43 2005
         (587 letters)



>mm_chr7_49381527_49382513
          Length = 987

 Score =  342 bits (177), Expect = 3e-98
 Identities = 401/491 (81%), Gaps = 48/491 (9%)
 Strand = Plus / Plus

                                                                       
Query: 78  gacatttcatgcctatatcctccattgtgatattttgtcttgtttgaccacatatggtct 137
           ||||||||||||||| ||||||||| |||||||||| |||||| ||| |||| |||||||
Sbjct: 278 gacatttcatgcctacatcctccatggtgatattttctcttgtctgagcacacatggtct 337

                                                                       
Query: 138 tctatgtgctttcataatgat-catgggctcaaatgtgcaactcttgtggactgaaaata 196
           || ||||||| |||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 338 tcaatgtgctatcataatgatgc-tgggttcaaatgtgcaactcttgtggactgaaaata 396

                                                                       
Query: 197 atgtttccttttagtcatctacaag-ttctgatcttta--atcttcacactccttttttg 253
            | ||||||| | || ||| ||||| || || ||||||  |||||| |||| ||||| ||
Sbjct: 397 ttctttccttgtggttatccacaagctt-tggtctttacaatcttcccacttcttttctg 455

                                                                       
Query: 254 ccatgattgctcagtctt-ttagggaggggtatgatatctaactgatttatggattagca 312
           |||||||| ||||| ||| || |||||| ||||||||||||||  |||||||||||||||
Sbjct: 456 ccatgattactcagccttgtt-gggaggagtatgatatctaacccatttatggattagca 514

                                                                       
Query: 313 cctta--tattctattattatatgtaccatgatcagtcagagatttatgtattatttg-c 369
             |||  |||||||||||||| |||| ||| |          |||||| ||||||||  |
Sbjct: 515 --ttacatattctattattatgtgtaacat-a----------atttatatattatttatc 561

                                                                       
Query: 370 gatttactataaaaaga-atttatgaggagggctgatggatgcactaatt------taca 422
            |||||||||||||| | |||||||||||||| |||||||||||||||||      ||||
Sbjct: 562 -atttactataaaaa-atatttatgaggagggttgatggatgcactaattgatgggtaca 619

                                                                       
Query: 423 tcaataagtcattagtggttgattttgtactttaa--cataataagagtattaaattatc 480
           | |||||||||||||| | ||||||||  ||  ||  ||||||||||| ||||| |||||
Sbjct: 620 ttaataagtcattagttgctgattttg--ct--aaagcataataagagaattaagttatc 675

                                                                       
Query: 481 cttgt-gtatctacaacttaaa--cttatcacagagtcttgccactttt-atagtgcaat 536
           | ||| | | |||  ||||     |||| |||| ||| ||| || |||| ||||||||||
Sbjct: 676 cctgtag-agctatgactt---gtcttaccacaaagttttgaca-ttttcatagtgcaat 730

                      
Query: 537 gcatgttttct 547
           |||||||||||
Sbjct: 731 gcatgttttct 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)