BAC Information

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BAC

Clone NameMSMg01-114O18
Chromosome7 (Build37)
Map Location 115,785,515 - 115,785,968
singlet/doubletsinglet
Overlap genenone
Upstream genePpfibp2, Cyb5r2, Ovch2, LOC100042310, Olfr467, Olfr468-ps1, Olfr469, GA_x5J8B7W6B6J-2580381-2580079, Olfr470, Olfr471, LOC626661, Olfr472, Olfr473, LOC669301, Olfr474, Olfr476, Olfr477, LOC626732, Olfr478, Olfr479, Olfr480, Olfr481, LOC100043059, Olfr482, Olfr483, Olfr484, Olfr485, Olfr486, Olfr487, Olfr1538-ps1, Olfr488, LOC546990, Olfr489-ps1, Olfr490, LOC626881, Olfr491, Olfr492, Olfr493, Olfr494, Olfr495, Olfr496-ps1, Olfr497, Olfr498, Olfr499-ps1, Olfr500-ps1, Olfr501-ps1, Olfr502, LOC269980, Olfr503, Olfr504, Olfr505-ps1, Olfr506, Olfr507, Olfr508
Downstream geneOlfr509, Olfr510, Olfr511-ps1, Olfr512, Olfr513, Olfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114O18.T7 (MSMg01no114_o18.b1)MSMg01-114O18.TJ (MSMg01no114_o18.g1)
ACCAG326684AG326685
length760741
length of high quality
(start - end)
458 (46 - 503)589 (72 - 660)
definitionCHROMAT_FILE: MSMg01no114_o18.b1 PHD_FILE: MSMg01no114_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:44 2005CHROMAT_FILE: MSMg01no114_o18.g1 PHD_FILE: MSMg01no114_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAAATTTATGTTTTTCCTGCCTCATCCTCGAGTCCTGGGATTA
CCAATGTGCACCATGATGCCAAACCTTTGCTTATATAAACACTACTAAGT
AATGGTTCTTTTATTCATTCATGTCTTATTTTCATTTCTTACTCAAAAGA
AGTTAAACCAAAAAGTTTCTTAAGATTTCTTTGAATAGGCAAAACCATGG
GAACCAGAAGAATGAGAGGAACAATTCGAGGAGCCAGAGTGCTTGAGGCC
AGTACCTGAACCCAATGCACATTATCAACTAAAAGAATTTCTTTGAAATT
CTTCTGTGTTGTGGTCATTTCCTCATCATAACTCTAAATTTGCATTTTTT
TTAATAGTAATGTCTCTACTTTCCCTGTCCTCTTCCCTCTTCGTTTCTCT
TTTCTTCTTTCTCATTCCTTCTCCTTTTCACTACCTCTCCCTCTTTCTTC
AGCCTCATTCACTTTTAATTAAACATACTTTTGCTTTCTTTGCTCTGCCT
TATCAACCAAGTAAGTCTCATCGAAACATGCCATTGCCATGTCTGTCTTC
CTTTTTGACCATACCATATGCTTTGCCTCCCAGAATTACTGTGAATAATG
TTGTCATGGACCATACACTAACTGGCCCAACTTGAGGCCCATATCATGAG
AGGCAGTCCATACCTACCACTGTAATTGATGGCCATCAAACCACAGGCTT
GTCCTCCCAA
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATTAGTATCAAGGATTGATTCTGTCCT
ATGGGATGAATCCAATTTGGGCCAGTCATTGGCTGTCTGTTCACGTCATC
TCTGCTTCATCTTTGTCTCTGTACATCTTGTAGGCAGGGCACATATTGGA
ATGAGGGTAAGTTGTTGTCTTTATTCCTCCACTGGGAGTCCTGCCTAGCT
ATAAAAAGTGGCCACTTCAGGATCCATAACTTCCACTGCTAGGAGTCTCA
GCTAGAATCACTCCCATAGGCTCACTGGAGCTTTCCCCATCCCGGGTCCC
TGGCAGATCCTAGAGATGCCTCCCCTTTATGAGTACACTGAAGATTTCCA
TTCTCCCCTGCTCTCCCTACACCTGATCCCTCTGATCTGCTACAGTCTTT
ATTCCCTCTCCTATCCAGTTCCCTATCTCCATCCACCTCTTATATCCATT
TTAATTCCCTTTCTGTGAAAGATTTAGCCATCTTCCCTCAGCCTTCCTTG
TTATTTAGCTTCTTTGAGTCTGGATTGTAGCTTGGGTATCCTGTACTTTA
TGGCTACTATCAACATATAAGTGAGTACATACCATGCATGTCCTTTTGGG
TCAGGGTTATCTCACTCAGGATAATATTTTCTAGTTCCATCCACTAACCT
GCAAAACTCAGGATGTTCTCATTCTTAATAGGGGAGTAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_o18.b1 MSMg01no114_o18.b1 CHROMAT_FILE:
MSMg01no114_o18.b1 PHD_FILE: MSMg01no114_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:44 2005
         (458 letters)



>mm_chr7_115785312_115786168
          Length = 857

 Score =  857 bits (443), Expect = 0.0
 Identities = 452/455 (99%), Gaps = 1/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcaaatttatgtttttcctgcctcatcctcgagtcctgggattaccaatgtg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcaaatttatgtttttcctgcctcatcctcgagtcctgggattaccaatgtg 263

                                                                       
Query: 64  caccatgatgccaaacctttgcttatataaacactactaagtaatggttcttttattcat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caccatgatgccaaacctttgcttatataaacactactaagtaatggttcttttattcat 323

                                                                       
Query: 124 tcatgtcttattttcatttcttactcaaaagaagttaaaccaaaaagtttcttaagattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcatgtcttattttcatttcttactcaaaagaagttaaaccaaaaagtttcttaagattt 383

                                                                       
Query: 184 ctttgaataggcaaaaccatgggaaccagaagaatgagaggaacaattcgaggagccaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttgaataggcaaaaccatgggaaccagaagaatgagaggaacaattcgaggagccaga 443

                                                                       
Query: 244 gtgcttgaggccagtacctgaacccaatgcacattatcaactaaaagaatttctttgaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgcttgaggccagtacctgaacccaatgcacattatcaactaaaagaatttctttgaaa 503

                                                                       
Query: 304 ttcttctgtgttgtggtcatttcctcatcataactctaaatttgcattttttttaatagt 363
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||
Sbjct: 504 ttcttctgtgttgtggtcatttcctcattataactctaaatttgtattttttt-aatagt 562

                                                                       
Query: 364 aatgtctctactttccctgtcctcttccctcttcgtttctcttttcttctttctcattcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatgtctctactttccctgtcctcttccctcttcgtttctcttttcttctttctcattcc 622

                                              
Query: 424 ttctccttttcactacctctccctctttcttcagc 458
           |||||||||||||||||||||||||||||||||||
Sbjct: 623 ttctccttttcactacctctccctctttcttcagc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 857
Length adjustment: 10
Effective length of query: 448
Effective length of database: 847
Effective search space:   379456
Effective search space used:   379456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)