BAC Information

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BAC

Clone NameMSMg01-115D11
Chromosome7 (Build37)
Map Location 60,962,851 - 60,963,363
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620782, LOC100040692, Gm1865, LOC100040718
Downstream geneLOC668789, Mrps33p, LOC622146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115D11.T7 (MSMg01no115_d11.b1)MSMg01-115D11.TJ (MSMg01no115_d11.g1)
ACCAG326902AG326903
length737727
length of high quality
(start - end)
517 (46 - 562)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no115_d11.b1 PHD_FILE: MSMg01no115_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:06 2005CHROMAT_FILE: MSMg01no115_d11.g1 PHD_FILE: MSMg01no115_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGAGGTCATGAAGCACCTAAAGAAATATTCAACATCTTTA
GTCATCAGGAAAATGCAAATCAAAACAACCCTGAGATTCCACCTTACACT
AGTCAGAATGGCGAAGATCAAAAACTCAGGTGACAGCAGATGCTGTTGAG
GATGTGGAGAAAGAGGAACACTCCTCCATCAATTCTTAATATAGACAGAC
CAAATAGGGGTGTGTTTAAAATAGTGAATAACATTCATGGTTTAATATAA
CTAATAAAGTAACTCAACCATAAAAATTGGAAAGTTTAATTAAATCAAGC
TTGTGTATGAGAAGTTCACACTCAACAGGCAAGAAATGAGACACATAAGA
GATTAGGTTCAGCACACTGAAGGGGGAGGGAAATGGTACTTCCAGTTGAC
ACAGAAAAGAGGAAATACATTTGGATTCATGATCTGAACACATTGTGGTA
TCTTCCATGCCCCAGAAAGATGCCGAAGGAAGTATTTTTCATGTTGAAAA
ATGAACTGGGCTTTTCTTTGGTAAGAAGTCTTTCAGGTACTCAATGCCCA
CGTCCCTTGGCCATTTTCCTAAGTTCCATCCTATATATGGGACCAAAAAG
AAGAACTACATTAAAGTACTTGCAGAAAGGACATTCTAAAGGACATATTC
CCAAGGAAAAACTGTGCAGCGACAGCCTGTGCTACTN
NNNAACGATGTAGTXXXXXXXXXXXXXXXXXXXXXTTTTCTGACTTGAGG
TGAACTATAGAAGGTTTCGGAAATTCTTTGTTCAGCTCTGAGCCCCATTT
TTAATGGGGTTATTTGATTTTCTGCACGCCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGTTCCTT
TCCCAATCTGTTGTTGGCATTTTTGTCTTATTGACGGTGTCTTTTGCCTT
ACAGAATCTTTGAAATTTTATGAGGTCCTATTTGTAGATTCTCGATCTTA
TGGCACAAGCCATTGCTGTTCTTAACTGNATTTTTCCCCTGTGCCCATAT
CTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGT
TTTATGTGGAGTTCCTTGACCTACTTATATTTGACATAAGTACAAGGAGA
TAGGAATGCATAAATTTGCACTTCTACATGATAACTGCCTATTGTGCCAG
CACCATTTGTTAACAATGTTGTCTTTTTTCCCCTGGATGCCATTATCTCC
CTTGTCAAAGATCATCCGATTATAGGTGCGGTGTTCATCTTCCTTCATCC
ACGCCCGCAAATTTTGTGGTTCCTCTTTTTGCTTTCTCTTCTCTCCGTCT
TTTTATCGCCTCATTTTTTTTTTTTTTTCCCCTCTTCCTTTTTCTCCCAT
TGTCCTTTCTACCTTCTCCTCTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_d11.b1 MSMg01no115_d11.b1 CHROMAT_FILE:
MSMg01no115_d11.b1 PHD_FILE: MSMg01no115_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:06 2005
         (517 letters)



>mm_chr7_60962467_60963383
          Length = 917

 Score =  915 bits (473), Expect = 0.0
 Identities = 503/513 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacctgaggtcatgaagcacctaaagaaatattcaacatctttagtcatcagg 64
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 897 gaattctcacctgaggtcatgaagcacctaaagaaatattcaacatctctagtcatcagg 838

                                                                       
Query: 65  aaaatgcaaatcaaaacaaccctgagattccaccttacactagtcagaatggcgaagatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aaaatgcaaatcaaaacaaccctgagattccaccttacactagtcagaatggcgaagatc 778

                                                                       
Query: 125 aaaaactcaggtgacagcagatgctgttgaggatgtggagaaagaggaacactcctccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aaaaactcaggtgacagcagatgctgttgaggatgtggagaaagaggaacactcctccat 718

                                                                       
Query: 185 caattcttaatatagacagaccaaataggggtgtgtttaaaatagtgaataacattcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 caattcttaatatagacagaccaaataggggtgtgtttaaaatagtgaataacattcatg 658

                                                                       
Query: 245 gtttaatataactaataaagtaactcaaccataaaaattggaaagtttaattaaatcaag 304
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 657 gtttaatataattaataaagtaactcaaccataaaaattggaaagtttaattaaatcgag 598

                                                                       
Query: 305 cttgtgtatgagaagttcacactcaacaggcaagaaatgagacacataagagattaggtt 364
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tttgtgtatgagaagttcacactcaacaggcaagaaatgagacacataagagattaggtt 538

                                                                       
Query: 365 cagcacactgaagggggagggaaatggtacttccagttgacacagaaaagaggaaataca 424
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cagcaaattgaagggggagggaaatggtacttccagttgacacagaaaagaggaaataca 478

                                                                       
Query: 425 tttggattcatgatctgaacacattgtggtatcttccatgccccagaaagatgccgaagg 484
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 477 tttgggttcatgatctgaacacattgtggtatcttccatgccccagaaagatgctgaagg 418

                                            
Query: 485 aagtatttttcatgttgaaaaatgaactgggct 517
           || |||||||||||||| |||||||||||||||
Sbjct: 417 aaatatttttcatgttggaaaatgaactgggct 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)