XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGG
CATGAACAGAAGCAAAGACCATGAAAGAACATTGTTTACTGGCTTATTCC
TCTTGGGTTACTCAGTCTGCTTTCTTTGACCACCCAGGACCACCCTTCCC
AGGAGTAGCACCAGCCTCAATAACCTGGGCCTTCCCATATCAATCAATAA
GCAGAAAAATGTCCTACAGTCTTGCCTACAGATAACCTGAAGATGGCTGC
ACTTCTGCTCAGAGGCTAGTCCTGTACAACAGGTTTGTAACATTATAGTC
TATAGAGAATATACCTGGTATGTGCAAGGTCCTAGGCTCAATCCTAGCTA
CTGGGGGCAGGGAGAGTCAGCTATAGAATAACCATGAATATTGATTCTAC
TGAGTGCCGGCTTAGCTGGCATCTGAAATAATTTAAACATTTCCCTGGTG
ATCTTATCCCACATGGTAGGGCCCAGGATACTAAGGGCCTTTGCCTAAAA
ACTACAAATATAAAGAAAAAGAAAAGCCCCTCCAAGTCCTAATGAATGTG
GTATGTTACCAATTGTGTTATCTCCTGCCATCTCTCAAATTACTGGTTCT
ATACTCTGGATCTCTGGAGACCAGGAATTCAGCAATGTTTCAGTCTCTAG
GGTGTGGTCACCTTGAATCTGCTGGGTCCCACCCCATAGGTCATCCCCCA
TTTAGGGGGTGAGGCAGTGAATAGTGGAGAAGGAGGT

TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGCCACACCTAGGCCGGGAA
GGTGGATTGCACCTGCAATCCAATGAGAGGCTGAGGCAGAAGCATTGCTA
GTTTCAAGCTGGCATGGACTACAGAGCAGAACTGTCTCAAAAGACAAAAA
CCAAACCAAAGACAAAACTCCAACAACAACAGCCCTGTCCCTGGAGGTCA
CCCCAATCCTGGGCTGCTATGGCTCACTTGCTTCTGGTAGGCTTTTTCTG
ACCTACTCTTCAGCACTGCTGATGCCCAGCATTCAGAAGAGCCCCCACCC
CCATCCCCCGCCCCCTGGAAGGCACTGCATTGATTCAAGTGGAAAAGCCA
GCTTTAGACTTGAATCTCCCCCGCCAGCCTGATGCTATACTTTTTAGAAT
TGGGACTGATGAGAAAAATGACTTAACACTGCTGTTTATTTAATAAGAGA
CAGCACTGTCCTCCCCATCCGAGGCTCCTTGTAAACAGCACCAGGCAAGC
AAGCGAAACTGAGTACATTAGAGTTTTCTGGAGTTAAATTCTGAATTAGG
ACATGGCACGGTCAACATAAAATCTATGCCCACTGCCATACAAACGCCAT
CGTCTGTTACTGCATCCACTGATCGCCTGTCTCCCACCACATTTTATTAC
CCCACTGCTGCCAGCCTTATTAA

Query= MSMg01no115_k17.b1 MSMg01no115_k17.b1 CHROMAT_FILE:
MSMg01no115_k17.b1 PHD_FILE: MSMg01no115_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:40 2005
         (542 letters)



>mm_chr7_39038479_39039420
          Length = 942

 Score = 1027 bits (531), Expect = 0.0
 Identities = 531/531 (100%)
 Strand = Plus / Minus

                                                                       
Query: 12  aggcatgaacagaagcaaagaccatgaaagaacattgtttactggcttattcctcttggg 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 aggcatgaacagaagcaaagaccatgaaagaacattgtttactggcttattcctcttggg 883

                                                                       
Query: 72  ttactcagtctgctttctttgaccacccaggaccacccttcccaggagtagcaccagcct 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 ttactcagtctgctttctttgaccacccaggaccacccttcccaggagtagcaccagcct 823

                                                                       
Query: 132 caataacctgggccttcccatatcaatcaataagcagaaaaatgtcctacagtcttgcct 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 caataacctgggccttcccatatcaatcaataagcagaaaaatgtcctacagtcttgcct 763

                                                                       
Query: 192 acagataacctgaagatggctgcacttctgctcagaggctagtcctgtacaacaggtttg 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 acagataacctgaagatggctgcacttctgctcagaggctagtcctgtacaacaggtttg 703

                                                                       
Query: 252 taacattatagtctatagagaatatacctggtatgtgcaaggtcctaggctcaatcctag 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 taacattatagtctatagagaatatacctggtatgtgcaaggtcctaggctcaatcctag 643

                                                                       
Query: 312 ctactgggggcagggagagtcagctatagaataaccatgaatattgattctactgagtgc 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctactgggggcagggagagtcagctatagaataaccatgaatattgattctactgagtgc 583

                                                                       
Query: 372 cggcttagctggcatctgaaataatttaaacatttccctggtgatcttatcccacatggt 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 cggcttagctggcatctgaaataatttaaacatttccctggtgatcttatcccacatggt 523

                                                                       
Query: 432 agggcccaggatactaagggcctttgcctaaaaactacaaatataaagaaaaagaaaagc 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agggcccaggatactaagggcctttgcctaaaaactacaaatataaagaaaaagaaaagc 463

                                                              
Query: 492 ccctccaagtcctaatgaatgtggtatgttaccaattgtgttatctcctgc 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ccctccaagtcctaatgaatgtggtatgttaccaattgtgttatctcctgc 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no115_k17.g1 MSMg01no115_k17.g1 CHROMAT_FILE:
MSMg01no115_k17.g1 PHD_FILE: MSMg01no115_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:40 2005
         (326 letters)



>mm_chr7_38879488_38880213
          Length = 726

 Score =  623 bits (322), Expect = 0.0
 Identities = 325/326 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagccacacctaggccgggaaggtggattgcacctgcaatccaatgagaggctgaggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagccacacctaggccgggaaggtggattgcacctgcaatccaatgagaggctgaggcag 260

                                                                       
Query: 61  aagcattgctagtttcaagctggcatggactacagagcagaactgtctcaaaagacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcattgctagtttcaagctggcatggactacagagcagaactgtctcaaaagacaaaa 320

                                                                       
Query: 121 accaaaccaaagacaaaactccaacaacaacagccctgtccctggaggtcaccccaatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accaaaccaaagacaaaactccaacaacaacagccctgtccctggaggtcaccccaatcc 380

                                                                       
Query: 181 tgggctgctatggctcacttgcttctggtaggctttttctgacctactcttcagcactgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggctgctatggctcacttgcttctggtaggctttttctgacctactcttcagcactgc 440

                                                                       
Query: 241 tgatgcccagcattcagaagagcccccacccccatcccccgccccctggaaggcactgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tgatgcccagcattcagaagagcccccacccccatcccccgccccctggaaggtactgca 500

                                     
Query: 301 ttgattcaagtggaaaagccagcttt 326
           ||||||||||||||||||||||||||
Sbjct: 501 ttgattcaagtggaaaagccagcttt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)